if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("waldronlab/MicrobiomeBenchmarkDataLefse")
Check the inst/scripts for source code. Check the inst/extdata directory for results.
conda create -n lefse conda activate lefse ## conda config --set channel_priority flexible # This might be necessary conda install -c bioconda lefse
## R dependencies must be installed Rscript --vanilla getData.R
## conda activate lefse ./runLefse.sh
conda deactivate