bugphyzz is a collection of bacterial physiological features to be used as a resource for physiological discovery and producing signatures. We are continuously curating bugphyzz databases through 3 main methods: webscraping, bulk download from online databases, and manual curation from literature. Mainly this database was concieved for analyzing microbiome data using physiological information. Bugphyzz can allow a user to look at specific physiologies, and create signature sets with specific bugs. The uniform structure of the data is what allows for the latter to manifest.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

##Release version
BiocManager::install("bugphyzz")

## Devel version
BiocManager::install("waldronlab/bugphyzz")

After installation, check vignettes with:

browseVigenttes("bugphyzz")