Expression Project for Oncology (expO)

EXpression Project for Oncology, International Genomics Consortium, www.intgen.org

data( GSE2109_eset )

Format

experimentData(eset):
Experiment data
  Experimenter name: EXpression Project for Oncology, International Genomics Consortium, www.intgen.org
  Laboratory: expO, IGC 2005
  Contact information:
  Title: Expression Project for Oncology (expO)
  URL:
  PMIDs: PMID unknown

  Abstract: A 8 word abstract is available. Use 'abstract' method.
  Information is available on: preprocessing
  notes:
   platform_title:
      [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array
   platform_shorttitle:
      Affymetrix HG-U133Plus2
   platform_summary:
      hgu133plus2
   platform_manufacturer:
      Affymetrix
   platform_distribution:
      commercial
   platform_accession:
      GPL570
   platform_technology:
      in situ oligonucleotide
   warnings:
      No warnings yet

Preprocessing: frma
featureData(eset):
An object of class 'AnnotatedDataFrame'
  featureNames: A1BG A1BG-AS1 ... ZZZ3 (19320 total)
  varLabels: probeset gene
  varMetadata: labelDescription

Details

assayData: 19320 features, 427 samples
Platform type: hgu133plus2
---------------------------
Available sample meta-data:
---------------------------

alt_sample_name:
   Length     Class      Mode
      427 character character

sample_type:
tumor
  427

primarysite:
 co  re
343  84

summarygrade:
high  low NA's
  75  270   82

G:
   1    2    3    4 NA's
  10  260   71    4   82

summarystage:
early  late  NA's
  166   177    84

T:
   Length     Class      Mode
      427 character character

N:
   0    1    2    X NA's
 187  101   59    3   77

M:
   0    1    X NA's
 274   64    9   80

Dstage:
   A    B    C    D NA's
  51  113  105    5  153

age_at_initial_pathologic_diagnosis:
   Min. 1st Qu.  Median    Mean 3rd Qu.    Max.
  25.00   55.00   65.00   65.68   75.00   95.00

gender:
   f    m NA's
 207  219    1

stageall:
   Min. 1st Qu.  Median    Mean 3rd Qu.    Max.    NA's
  0.000   2.000   2.000   2.516   3.000   4.000      90

ethnicity:
    black caucasian  hispanic     other
       23       391         1        12

batch:
   Length     Class      Mode
      427 character character

uncurated_author_metadata:
   Length     Class      Mode
      427 character character