Genome-wide profiling characterizes CRCs with genetic instability and specific routes to HLA class I loss and immunoescape

Bernal M,??Garc??Alcalde F,??Concha ????Blanco A,??Garrido F,??Ruiz-Cabello F

data( GSE27544_eset )

Format

experimentData(eset):
Experiment data
  Experimenter name: Bernal M,??Garc??Alcalde F,??Concha ????Blanco A,??Garrido F,??Ruiz-Cabello F
  Laboratory: Bernal M,??Garc??Alcalde F,??Concha ????Blanco A,??Garrido F,??Ruiz-Cabello F 2011
  Contact information:
  Title: Genome-wide profiling characterizes CRCs with genetic instability and specific routes to HLA class I loss and immunoescape
  URL:
  PMIDs: PMID unknown

  Abstract: A 7 word abstract is available. Use 'abstract' method.
  Information is available on: preprocessing
  notes:
   platform_title:
      [HT_HG-U133_Plus_PM] Affymetrix HT HG-U133+ PM Array Plate
   platform_shorttitle:
      Affymetrix HT HG-U133+ PM
   platform_summary:
      hthgu133pluspm
   platform_manufacturer:
      Affymetrix
   platform_distribution:
      commercial
   platform_accession:
      GPL13158
   platform_technology:
      in situ oligonucleotide
   warnings:
      No warnings yet

Preprocessing: default
featureData(eset):
An object of class 'AnnotatedDataFrame'
  featureNames: A1BG A1CF ... ZZZ3 (20741 total)
  varLabels: probeset gene
  varMetadata: labelDescription

Details

assayData: 20741 features, 22 samples
Platform type: hthgu133pluspm
---------------------------
Available sample meta-data:
---------------------------

alt_sample_name:
   Length     Class      Mode
       22 character character

sample_type:
tumor
   22

msi:
MSI MSS
  8  14

batch:
2009-10-07
        22

uncurated_author_metadata:
   Length     Class      Mode
       22 character character