Get the Levels of Evidence Tables from OncoKB

The levels of evidence table is an S4Vectors DataFrame that includes metadata consisting of app, api, data, and oncoTree version tags which were used to generate the table.

Usage

levelsOfEvidence(api)

Arguments

api

An OncoKB API instance as returned by oncoKB()

Value

A DataFrame with metadata

Examples

oncokb <- oncoKB()
levelsOfEvidence(oncokb)
#> DataFrame with 16 rows and 4 columns
#>     levelOfEvidence            description        htmlDescription    colorHex
#>         <character>            <character>            <character> <character>
#> 1           LEVEL_1 FDA-recognized bioma.. <span><b>FDA-recogni..     #33A02C
#> 2           LEVEL_2 Standard care biomar.. <span><b>Standard ca..     #1F78B4
#> 3          LEVEL_3A Compelling clinical .. <span><b>Compelling ..     #984EA3
#> 4          LEVEL_3B Standard care or inv.. <span><b>Standard ca..     #BE98CE
#> 5           LEVEL_4 Compelling biologica.. <span><b>Compelling ..     #424242
#> ...             ...                    ...                    ...         ...
#> 12        LEVEL_Px1 FDA and/or professio.. <span><b>FDA and/or ..     #33A02C
#> 13        LEVEL_Px2 FDA and/or professio.. <span><b>FDA and/or ..     #1F78B4
#> 14        LEVEL_Px3 Biomarker is prognos.. <span>Biomarker is p..     #984EA3
#> 15         LEVEL_R1 Standard care biomar.. <span><b>Standard of..     #EE3424
#> 16         LEVEL_R2 Compelling clinical .. <span><b>Compelling ..     #F79A92