R/MultiAssayExperimentToMAF.R
MultiAssayExperimentToMAF.Rd
Take a MultiAssayExperiment
object with specific mutation
assays and convert these into a maftools
representation. The names
provided via synAssay
and nonSynAssay
must match exactly those
assays in the MultiAssayExperiment
.
MultiAssayExperimentToMAF(x, synAssay = "maf_syn", nonSynAssay = "maf_nonSyn")
A MultiAssayExperiment
object
character(1) The name of the ExperimentList
element in the
MultiAssayExperiment
that identifies synonymous variant classifications.
character(1) The name of the ExperimentList
element in
the MultiAssayExperiment
that identifies non-synonymous variant
classifications.