MultiAssayExperiment

Software for the integration of multi-omics experiments in Bioconductor

MultiAssayExperiment Package

RaggedExperiment

Flexible representation of copy number, mutation and other data with genomic locations

RaggedExperiment Package

TCGAutils

Utilities to make working with The Cancer Genome Atlas (TCGA) easier

TCGAutils Package

curatedTCGAData

The Cancer Genome Atlas (TCGA) as MultiAssayExperiment objects

curatedTCGAData Package

curatedMetagenomicData

Curated metagenomic shotgun sequencing data for study of the human microbiome

curatedMetagenomicData Package

HMP16SData

16S rRNA sequencing data from the Human Microbiome Project

HMP16SData Package

EnrichmentBrowser

Seamless navigation of set-based and network-based enrichment analysis

EnrichmentBrowser Package

GSEABenchmarkeR

Reproducible benchmarking of gene set analysis methods

GSEABenchmarkeR Package

curatedOvarianData

Clinically annotated data for the ovarian cancer transcriptome

curatedOvarianData Package

consensusOV

Molecular subtype classification for high-grade serous ovarian cancer

consensusOV Package

doppelgangR

Identify likely duplicate samples from genomic or meta-data

doppelgangR Package

ffpe

Quality assessment and control for FFPE microarray expression data

Bioconductor Package

simulatorZ

Simulator for Collections of Independent Genomic Data Sets

simulatorZ Package

BiocManager

The new way to install and update Bioconductor packages

BiocManager Package

HGNChelper

Identify and Correct Invalid Human and Mouse Gene Symbols

HGNChelper Package

pensim

Simulation of high-dimensional data and parallelized repeated penalized regression

CRAN Package