Software

Software for the integration of multi-omics experiments in Bioconductor

Flexible representation of copy number, mutation and other data with genomic locations

The Cancer Genome Atlas (TCGA) as MultiAssayExperiment objects

Utilities to make working with The Cancer Genome Atlas (TCGA) easier

cBioPortal web resources as MultiAssayExperiment objects

Integrating Multi-modal Single Cell Experiment datasets

Curated metagenomic shotgun sequencing data for study of the human microbiome

16S rRNA sequencing data from the Human Microbiome Project

R implementation of the LEfSE method for microbiome biomarker discovery

Seamless navigation of set-based and network-based enrichment analysis

Reproducible benchmarking of gene set analysis methods

Clinically annotated data for the ovarian cancer transcriptome

Molecular subtype classification for high-grade serous ovarian cancer

Identify likely duplicate samples from genomic or meta-data

Quality assessment and control for FFPE microarray expression data

Simulator for Collections of Independent Genomic Data Sets

a comprehensive tool suite for Copy Number Variation analysis

The new way to install and update Bioconductor packages

Identify and Correct Invalid Human and Mouse Gene Symbols

Simulation of high-dimensional data and parallelized repeated penalized regression