Start Here by Topic
Use these guided entry points to find the right workshop or vignette for your goals.
Multi-omic Data Management
BeginnerBest for: New and returning Bioconductor users
Learn to manage and integrate multi-omics datasets with a practical QuickStart guide.
- R
- Bioconductor
- MultiAssayExperiment
Cancer Bioportal Data in Bioconductor
IntermediateBest for: Translational and cancer data analysts
Access and analyze cBioPortal cancer data directly in Bioconductor workflows.
- R
- Bioconductor
- cBioPortalData
Curated Metagenomic Data
IntermediateBest for: Microbiome researchers and bioinformaticians
Start from harmonized metagenomic datasets and reproducible analysis examples.
- R
- Bioconductor
- Microbiome
Curated Parkinson's Disease Data
IntermediateBest for: Neurodegeneration and microbiome collaborators
Explore curated Parkinson's microbiome datasets and project resources.
- R
- Microbiome
- Parkinson's
BugSigDB and Signature Analysis
IntermediateBest for: Researchers benchmarking microbial signatures
Navigate the BugSigDB knowledge base and jump into bugsigdbr analysis workflows.
- R
- bugsigdbr
- BugSigDB
Package Catalog
MultiAssayExperiment
Software for the integration of multi-omics experiments in Bioconductor
- R
- Bioconductor
- Multi-omics
RaggedExperiment
Flexible representation of copy number, mutation and other data with genomic locations
- R
- Bioconductor
- Genomics
curatedTCGAData
The Cancer Genome Atlas (TCGA) as MultiAssayExperiment objects
- R
- Bioconductor
- Cancer genomics
TCGAutils
Utilities to make working with The Cancer Genome Atlas (TCGA) easier
- R
- Bioconductor
- Cancer genomics
cBioPortalData
cBioPortal web resources as MultiAssayExperiment objects
- R
- Bioconductor
- Cancer genomics
SingleCellMultiModal
Integrating Multi-modal Single Cell Experiment datasets
- R
- Bioconductor
- Single-cell
curatedMetagenomicData
Curated metagenomic shotgun sequencing data for study of the human microbiome
- R
- Bioconductor
- Microbiome
- Metagenomics
HMP16SData
16S rRNA sequencing data from the Human Microbiome Project
- R
- Bioconductor
- Microbiome
- 16S
lefser
R implementation of the LEfSE method for microbiome biomarker discovery
- R
- Bioconductor
- Microbiome
- Biomarkers
EnrichmentBrowser
Seamless navigation of set-based and network-based enrichment analysis
- R
- Bioconductor
- Enrichment
- Networks
GSEABenchmarkeR
Reproducible benchmarking of gene set analysis methods
- R
- Bioconductor
- Enrichment
- Benchmarking
curatedOvarianData
Clinically annotated data for the ovarian cancer transcriptome
- R
- Bioconductor
- Cancer genomics
- Ovarian cancer
consensusOV
Molecular subtype classification for high-grade serous ovarian cancer
- R
- Bioconductor
- Cancer genomics
- Subtyping
doppelgangR
Identify likely duplicate samples from genomic or meta-data
- R
- Bioconductor
- Quality control
ffpe
Quality assessment and control for FFPE microarray expression data
- R
- Bioconductor
- Quality control
- FFPE
simulatorZ
Simulator for Collections of Independent Genomic Data Sets
- R
- Bioconductor
- Simulation
CNVRanger
a comprehensive tool suite for Copy Number Variation analysis
- R
- Bioconductor
- Copy number variation
BiocManager
The new way to install and update Bioconductor packages
- R
- Bioconductor
- Package management
HGNChelper
Identify and Correct Invalid Human and Mouse Gene Symbols
- R
- Bioconductor
- Gene identifiers
pensim
Simulation of high-dimensional data and parallelized repeated penalized regression
- R
- Simulation