Recent Commit Activity

This site automatically tracks a curated list of GitHub projects funded by NIH grant 1U24CA289073-01 from the National Cancer Institute to Levi Waldron at the CUNY Graduate School of Public Health and Health Policy

Bioconductor/DelayedArray

Message: DelayedArray 0.35.4

Author: Hervé Pagès

Date: 2025-10-24 21:20:39 UTC


Bioconductor/S4Arrays

Message: crayon 1.9.2: Drop dependency on crayon

Author: Hervé Pagès

Date: 2025-10-24 21:07:52 UTC


waldronlab/VisiumIO

Message: version bump 1.5.12

Author: LiNk-NY

Date: 2025-10-24 20:35:30 UTC


waldronlab/VisiumIO

Message: update NEWS.md

Author: LiNk-NY

Date: 2025-10-24 20:35:25 UTC


waldronlab/VisiumIO

Message: add Estella

Author: LiNk-NY

Date: 2025-10-24 20:34:43 UTC


seandavi/BiocPkgTools

Message: version bump 1.27.15

Author: LiNk-NY

Date: 2025-10-24 20:07:48 UTC


seandavi/BiocPkgTools

Message: update email

Author: LiNk-NY

Date: 2025-10-24 20:07:43 UTC


waldronlab/curatedTCGAData

Message: version bump 1.31.3

Author: LiNk-NY

Date: 2025-10-24 19:06:04 UTC


waldronlab/curatedTCGAData

Message: change email

Author: LiNk-NY

Date: 2025-10-24 19:06:00 UTC


waldronlab/curatedTCGAData

Message: update NEWS.md

Author: LiNk-NY

Date: 2025-10-24 19:05:31 UTC


waldronlab/SingleCellMultiModal

Message: version bump 1.21.4

Author: LiNk-NY

Date: 2025-10-24 18:57:37 UTC


waldronlab/SingleCellMultiModal

Message: update email

Author: LiNk-NY

Date: 2025-10-24 18:57:35 UTC


waldronlab/SingleCellMultiModal

Message: update NEWS.md

Author: LiNk-NY

Date: 2025-10-24 18:57:24 UTC


seandavi/BiocPkgTools

Message: version bump 1.27.14

Author: LiNk-NY

Date: 2025-10-22 17:02:48 UTC


seandavi/BiocPkgTools

Message: update Roxygen version

Author: LiNk-NY

Date: 2025-10-22 17:02:36 UTC


seandavi/BiocPkgTools

Message: minor Rd formatting

Author: LiNk-NY

Date: 2025-10-22 17:02:23 UTC


Bioconductor/ExperimentHub

Message: Merge branch ‘Bisaloo-requireNamespace’ into devel

Author: lshep

Date: 2025-10-20 18:26:47 UTC


Bioconductor/ExperimentHub

Message: Update installed.packages to requiredNamespace

Author: lshep

Date: 2025-10-20 18:26:24 UTC


shbrief/GenomicSuperSignature

Message: update to follow the new column names

Author: Sehyun Oh

Date: 2025-10-15 15:56:29 UTC


waldronlab/VisiumIO

Message: version bump 1.5.11

Author: LiNk-NY

Date: 2025-10-14 17:18:23 UTC


waldronlab/VisiumIO

Message: update example in vignette

Author: LiNk-NY

Date: 2025-10-14 17:18:17 UTC


waldronlab/bedbaser

Message: Bump version to 1.1.3

Author: Wokaty

Date: 2025-10-12 19:51:16 UTC


waldronlab/bedbaser

Message: Fix bb_bed_text_search

Author: Wokaty

Date: 2025-10-12 16:44:44 UTC


shbrief/GenomicSuperSignature

Message: version bump

Author: Sehyun Oh

Date: 2025-10-06 02:12:57 UTC


shbrief/GenomicSuperSignature

Message: allow users to choose the number of PCs to validate against (with default)

Author: Sehyun Oh

Date: 2025-09-30 21:18:50 UTC


shbrief/OmicsMLRepoR

Message: version bump

Author: Sehyun Oh

Date: 2025-09-22 19:22:43 UTC


shbrief/OmicsMLRepoR

Message: documentation

Author: Sehyun Oh

Date: 2025-09-22 19:22:30 UTC


shbrief/OmicsMLRepoR

Message: temporal fix for spreadMeta - need new feature

Author: Sehyun Oh

Date: 2025-09-22 19:21:27 UTC


shbrief/OmicsMLRepoR

Message: fix to handle updated delimiters

Author: Sehyun Oh

Date: 2025-09-22 19:20:50 UTC


nih-cfde/programets

Message: quick consistency fix

Author: David Mayer

Date: 2025-09-22 18:08:45 UTC


nih-cfde/programets

Message: Merge pull request #20 from nih-cfde/get-github-graphql

Author: D Mayer

Date: 2025-09-22 18:00:36 UTC


nih-cfde/programets

Message: Merge pull request #19 from nih-cfde/get_github-updates

Author: D Mayer

Date: 2025-09-22 18:00:15 UTC


shbrief/OmicsMLRepoR

Message: update delimiter for dynamic enum nodes

Author: Sehyun Oh

Date: 2025-09-22 16:41:38 UTC


waldronlab/OmicsMLRepoData

Message: merge conflict resolved

Author: Sehyun Oh

Date: 2025-09-22 15:55:08 UTC


waldronlab/OmicsMLRepoData

Message: remove unnecessary column in cMD data dictionary

Author: Sehyun Oh

Date: 2025-09-22 15:47:49 UTC


waldronlab/OmicsMLRepoData

Message: using updated dictionary location

Author: Sehyun Oh

Date: 2025-09-22 15:47:14 UTC


waldronlab/OmicsMLRepoData

Message: updated cMD data dictionary

Author: Sehyun Oh

Date: 2025-09-22 15:46:34 UTC


waldronlab/OmicsMLRepoData

Message: update data dictionary location

Author: Sehyun Oh

Date: 2025-09-22 15:40:21 UTC


Bioconductor/ExperimentHub

Message: Use requireNamespace() to test for pkg availability

Author: Hugo Gruson

Date: 2025-09-16 09:19:03 UTC


Bioconductor/DelayedArray

Message: DelayedArray 0.35.3: Use anyNA() instead of S4Vectors:::anyMissing()

Author: Hervé Pagès

Date: 2025-09-13 05:00:33 UTC


seandavi/BiocBuildDB

Message: Add keep-alive date to GitHub Actions

Author: Sean Davis

Date: 2025-09-07 13:41:02 UTC


nih-cfde/programets

Message: add dependencies/suggests. restructure tests

Author: David Mayer

Date: 2025-09-04 16:13:42 UTC


nih-cfde/programets

Message: update docs

Author: David Mayer

Date: 2025-09-04 16:09:06 UTC


hpages/hovernethelp

Message: update minicluster/JOURNAL_OF_RUNS.txt

Author: Hervé Pagès

Date: 2025-08-31 05:27:00 UTC


Bioconductor/h5mread

Message: Improve and tweak README.md for better compatibility with pkgdown

Author: Hervé Pagès

Date: 2025-08-29 03:12:22 UTC


Bioconductor/S4Arrays

Message: Improve and tweak README.md for better compatibility with pkgdown

Author: Hervé Pagès

Date: 2025-08-29 03:08:25 UTC


Bioconductor/HDF5Array

Message: Improve and tweak README.md for better compatibility with pkgdown

Author: Hervé Pagès

Date: 2025-08-29 03:03:32 UTC


Bioconductor/SparseArray

Message: try again

Author: Hervé Pagès

Date: 2025-08-29 02:55:59 UTC


Bioconductor/SparseArray

Message: try again

Author: Hervé Pagès

Date: 2025-08-29 02:52:21 UTC


Bioconductor/SparseArray

Message: try again

Author: Hervé Pagès

Date: 2025-08-29 02:49:31 UTC


Bioconductor/SparseArray

Message: try again

Author: Hervé Pagès

Date: 2025-08-29 02:48:37 UTC


Bioconductor/SparseArray

Message: Try to improve layout of images in README.md

Author: Hervé Pagès

Date: 2025-08-29 02:47:41 UTC


Bioconductor/DelayedArray

Message: minor improvements to README.md

Author: Hervé Pagès

Date: 2025-08-29 01:53:06 UTC


Bioconductor/DelayedArray

Message: tweak layout a little

Author: Hervé Pagès

Date: 2025-08-29 00:55:44 UTC


Bioconductor/DelayedArray

Message: add “build” and “platforms” shields for devel in addition to release

Author: Hervé Pagès

Date: 2025-08-29 00:54:21 UTC


Bioconductor/BiocFileCache

Message: Merge pull request #68 from Bioconductor/trycatch_download

Author: lshep

Date: 2025-08-28 15:38:51 UTC


Bioconductor/BiocFileCache

Message: use tryCatch for bfcdownload when resource is unreliable

Author: LiNk-NY

Date: 2025-08-27 16:46:25 UTC


hpages/hovernethelp

Message: small tweak

Author: Hervé Pagès

Date: 2025-08-26 21:06:15 UTC


hpages/hovernethelp

Message: make infer_batch2.sh better at detecting run_infer.py failure

Author: Hervé Pagès

Date: 2025-08-25 16:24:29 UTC


Bioconductor/BiocFileCache

Message: version bump for test update

Author: lshep

Date: 2025-08-25 12:42:10 UTC


Bioconductor/BiocFileCache

Message: Merge pull request #67 from Bioconductor/sqlite_file_update

Author: lshep

Date: 2025-08-25 12:41:23 UTC


Bioconductor/BiocFileCache

Message: update sqlite test file location

Author: LiNk-NY

Date: 2025-08-22 19:28:49 UTC


waldronlab/MultiAssayExperiment

Message: version bump 1.35.9

Author: LiNk-NY

Date: 2025-08-18 20:35:17 UTC


waldronlab/MultiAssayExperiment

Message: set default check.names

Author: LiNk-NY

Date: 2025-08-18 20:29:57 UTC


waldronlab/ITCR-bioconductor

Message: Add files via upload

Author: bd4everyone

Date: 2025-08-14 18:44:35 UTC


waldronlab/ITCR-bioconductor

Message: Add files via upload

Author: bd4everyone

Date: 2025-08-14 18:44:03 UTC


waldronlab/ITCR-bioconductor

Message: Add files via upload

Author: bd4everyone

Date: 2025-08-14 18:43:06 UTC


waldronlab/ITCR-bioconductor

Message: Add files via upload

Author: bd4everyone

Date: 2025-08-14 18:42:33 UTC


waldronlab/ITCR-bioconductor

Message: Add files via upload

Author: bd4everyone

Date: 2025-08-14 18:41:48 UTC


waldronlab/MultiAssayExperiment

Message: version bump 1.35.8

Author: LiNk-NY

Date: 2025-08-12 17:42:50 UTC


waldronlab/MultiAssayExperiment

Message: update wideFormat docs

Author: LiNk-NY

Date: 2025-08-12 17:42:36 UTC


waldronlab/MultiAssayExperiment

Message: use check.names in wideFormat internal helper, closes #343

Author: LiNk-NY

Date: 2025-08-12 17:35:02 UTC


shbrief/curatedMetagenomicDataODM

Message: handling updated delimiter

Author: Sehyun Oh

Date: 2025-07-28 18:48:32 UTC


shbrief/curatedMetagenomicDataODM

Message: update delimiter

Author: Sehyun Oh

Date: 2025-07-25 22:53:37 UTC


Bioconductor/AnnotationHub

Message: Merge pull request #63 from Bioconductor/selectSome

Author: lshep

Date: 2025-07-25 12:12:30 UTC


waldronlab/bedbaser

Message: Update action, use release for pkgdown site (#19)

Author: jwokaty

Date: 2025-07-22 14:24:42 UTC


waldronlab/curatedTCGAData

Message: version bump 1.31.2

Author: LiNk-NY

Date: 2025-07-21 19:17:15 UTC


waldronlab/curatedTCGAData

Message: add chunk labels to vignette

Author: LiNk-NY

Date: 2025-07-21 19:17:13 UTC


waldronlab/cBioPortalData

Message: version bump 2.21.5

Author: LiNk-NY

Date: 2025-07-21 19:12:16 UTC


waldronlab/cBioPortalData

Message: add chunk labels to vignettes

Author: LiNk-NY

Date: 2025-07-21 19:11:37 UTC


waldronlab/cBioPortalData

Message: avoid NSE subset

Author: LiNk-NY

Date: 2025-07-21 19:11:18 UTC


waldronlab/cBioPortalData

Message: shorten line to 80 width limit

Author: LiNk-NY

Date: 2025-07-21 19:08:37 UTC


Bioconductor/GenomicFiles

Message: version bump 1.45.2

Author: LiNk-NY

Date: 2025-07-21 15:45:02 UTC


Bioconductor/GenomicFiles

Message: add URL and BugReports

Author: LiNk-NY

Date: 2025-07-21 15:44:56 UTC


Bioconductor/GenomicFiles

Message: remove whitespaces

Author: LiNk-NY

Date: 2025-07-21 15:44:45 UTC


Bioconductor/GenomicFiles

Message: update versions in DESC

Author: LiNk-NY

Date: 2025-07-21 15:43:53 UTC


Bioconductor/GenomicFiles

Message: format DESCRIPTION

Author: LiNk-NY

Date: 2025-07-21 15:42:32 UTC


Bioconductor/AnnotationHub

Message: use BiocBaseUtils::selectSome

Author: LiNk-NY

Date: 2025-07-17 19:28:50 UTC


Bioconductor/ExperimentHub

Message: Merge pull request #50 from Bioconductor/pkgdown_prep

Author: lshep

Date: 2025-07-16 16:51:02 UTC


Bioconductor/AnnotationHub

Message: Merge pull request #62 from Bioconductor/bioccheck_updates

Author: lshep

Date: 2025-07-16 16:48:47 UTC


waldronlab/bedbaser

Message: Bump to 1.1.2

Author: Wokaty

Date: 2025-07-16 15:48:23 UTC


waldronlab/bedbaser

Message: Remove bigbed from vignettes

Author: Wokaty

Date: 2025-07-16 15:47:50 UTC


Bioconductor/ExperimentHub

Message: load namespace and attach to search list

Author: LiNk-NY

Date: 2025-07-14 23:56:25 UTC


Bioconductor/AnnotationHub

Message: expand example in convertHub doc

Author: LiNk-NY

Date: 2025-07-14 23:37:51 UTC


Bioconductor/RaggedExperiment

Message: version bump 1.33.7

Author: LiNk-NY

Date: 2025-07-10 18:19:28 UTC


Bioconductor/RaggedExperiment

Message: roxygen package Rd update

Author: LiNk-NY

Date: 2025-07-10 18:19:22 UTC


Bioconductor/RaggedExperiment

Message: move chunk options to code chunk body

Author: LiNk-NY

Date: 2025-07-10 18:19:09 UTC


Bioconductor/RaggedExperiment

Message: version bump 1.33.6

Author: LiNk-NY

Date: 2025-07-10 17:55:39 UTC


Bioconductor/RaggedExperiment

Message: remove long link

Author: LiNk-NY

Date: 2025-07-10 17:55:27 UTC


waldronlab/XeniumIO

Message: version bump 1.1.3

Author: LiNk-NY

Date: 2025-07-03 20:58:11 UTC


waldronlab/XeniumIO

Message: remove rtype arg from bfcdownload

Author: LiNk-NY

Date: 2025-07-03 20:58:09 UTC


waldronlab/cBioPortalData

Message: version bump 2.21.4

Author: LiNk-NY

Date: 2025-07-02 20:34:20 UTC


waldronlab/MultiAssayWorkshop

Message: add concurrency limits

Author: LiNk-NY

Date: 2025-07-02 17:44:25 UTC


waldronlab/MultiAssayWorkshop

Message: use multiline sep

Author: LiNk-NY

Date: 2025-07-02 16:18:27 UTC


waldronlab/TCGAutils

Message: bump version 1.29.5

Author: LiNk-NY

Date: 2025-07-02 16:15:08 UTC


waldronlab/TCGAutils

Message: import genome and genome<- from Seqinfo

Author: LiNk-NY

Date: 2025-07-02 16:10:13 UTC


waldronlab/TCGAutils

Message: add GenomeInfoDb to vignette

Author: LiNk-NY

Date: 2025-07-02 16:09:54 UTC


waldronlab/MultiAssayWorkshop

Message: version bump 3.21.4

Author: LiNk-NY

Date: 2025-07-02 16:01:21 UTC


waldronlab/MultiAssayWorkshop

Message: move Date close to Version

Author: LiNk-NY

Date: 2025-07-02 16:00:37 UTC


waldronlab/MultiAssayWorkshop

Message: rename longFormat to longForm

Author: LiNk-NY

Date: 2025-07-02 15:52:39 UTC


waldronlab/TCGAutils

Message: version bump 1.29.4

Author: LiNk-NY

Date: 2025-07-02 15:24:46 UTC


waldronlab/TCGAutils

Message: add package argument to lifeCycle

Author: LiNk-NY

Date: 2025-07-02 15:24:44 UTC


waldronlab/TENxIO

Message: TENxIO 1.11.5: Imports Seqinfo instead of GenomeInfoDb

Author: Hervé Pagès

Date: 2025-06-21 05:21:24 UTC


Bioconductor/AnnotationHub

Message: AnnotationHub 3.99.6: Add Seqinfo to Suggests

Author: Hervé Pagès

Date: 2025-06-20 23:18:03 UTC


Bioconductor/BiocParallel

Message: Enable bpworkers<- calls on SerialParam (no-op) with user message

Author: LiNk-NY

Date: 2025-06-18 14:56:30 UTC


waldronlab/SingleCellMultiModal

Message: version bump 1.21.3

Author: LiNk-NY

Date: 2025-06-12 16:44:59 UTC


waldronlab/SingleCellMultiModal

Message: update vignette authors

Author: LiNk-NY

Date: 2025-06-12 16:44:54 UTC


Bioconductor/BiocParallel

Message: Transfer maintainership to Jiefei Wang

Author: Jiefei Wang

Date: 2025-06-12 02:39:17 UTC


Bioconductor/BiocParallel

Message: version bump 1.43.3

Author: LiNk-NY

Date: 2025-05-28 18:00:44 UTC


Bioconductor/BiocParallel

Message: convert Rnw vignettes to Rmd (#278)

Author: Marcel Ramos Pérez

Date: 2025-05-28 18:00:02 UTC


Bioconductor/S4Arrays

Message: S4Arrays 1.9.1

Author: Hervé Pagès

Date: 2025-05-27 20:15:38 UTC


hpages/hovernethelp

Message: update minicluster/JOURNAL_OF_RUNS.txt

Author: Hervé Pagès

Date: 2025-05-22 06:19:09 UTC


Bioconductor/BiocParallel

Message: Merge branch ‘Jiefei-Wang-force_load’ into devel

Author: Martin Morgan

Date: 2025-05-16 17:35:30 UTC


shbrief/GenomicSuperSignature

Message: fix conflicting versions

Author: Sehyun Oh

Date: 2025-05-16 03:16:21 UTC


Bioconductor/h5mread

Message: h5mread 1.1.1: Update BugReports field

Author: Hervé Pagès

Date: 2025-05-15 18:48:59 UTC


shbrief/GenomicSuperSignature

Message: Merge pull request #29 from shbrief/RELEASE_3_21

Author: Sehyun Oh

Date: 2025-05-15 01:33:18 UTC


waldronlab/oncoKBData

Message: version bump 0.99.7

Author: LiNk-NY

Date: 2025-05-09 21:26:32 UTC


waldronlab/oncoKBData

Message: import DataFrame constructor

Author: LiNk-NY

Date: 2025-05-09 21:26:28 UTC


waldronlab/oncoKBData

Message: version bump 0.99.6

Author: LiNk-NY

Date: 2025-05-09 21:16:21 UTC


waldronlab/oncoKBData

Message: update RoxygenNote

Author: LiNk-NY

Date: 2025-05-09 21:16:16 UTC


waldronlab/oncoKBData

Message: import from S4Vectors

Author: LiNk-NY

Date: 2025-05-09 21:16:08 UTC


waldronlab/HGNCREST

Message: version bump 0.99.6

Author: LiNk-NY

Date: 2025-05-09 16:02:53 UTC


waldronlab/HGNCREST

Message: add .Rbuildignore and update .gitignore

Author: LiNk-NY

Date: 2025-05-09 16:00:09 UTC


waldronlab/HGNCREST

Message: add biocViews to DESCRIPTION

Author: LiNk-NY

Date: 2025-05-09 15:58:59 UTC


waldronlab/TENxIO

Message: version bump 1.11.4

Author: LiNk-NY

Date: 2025-05-08 18:22:10 UTC


waldronlab/GSEABenchmarkeR

Message: version bump 1.29.1

Author: LiNk-NY

Date: 2025-05-08 16:44:31 UTC


waldronlab/CNVRanger

Message: version bump 1.25.4

Author: LiNk-NY

Date: 2025-05-08 16:17:16 UTC


waldronlab/CNVRanger

Message: fix references

Author: LiNk-NY

Date: 2025-05-08 16:17:11 UTC


waldronlab/CNVRanger

Message: version bump 1.25.3

Author: LiNk-NY

Date: 2025-05-08 15:04:54 UTC


drighelli/SpatialExperiment

Message: Merge pull request #167 from lmweber/devel

Author: Lukas Weber

Date: 2025-05-08 14:03:51 UTC


waldronlab/CNVRanger

Message: use bibliography

Author: LiNk-NY

Date: 2025-05-07 23:56:38 UTC


waldronlab/CNVRanger

Message: move png files to man/figures

Author: LiNk-NY

Date: 2025-05-07 22:46:10 UTC


drighelli/SpatialExperiment

Message: version

Author: Lukas Weber

Date: 2025-05-07 22:28:21 UTC


drighelli/SpatialExperiment

Message: update GHA

Author: Lukas Weber

Date: 2025-05-07 22:27:24 UTC


drighelli/SpatialExperiment

Message: update email

Author: Lukas Weber

Date: 2025-05-07 22:26:51 UTC


drighelli/SpatialExperiment

Message: Merge remote-tracking branch ‘upstream/devel’ into devel

Author: Lukas Weber

Date: 2025-05-07 22:22:38 UTC


waldronlab/GSEABenchmarkeR

Message: Merge pull request #17 from waldronlab/build_site_gha

Author: lgeistlinger

Date: 2025-05-07 22:12:33 UTC


waldronlab/GSEABenchmarkeR

Message: resolve build warning and note

Author: LiNk-NY

Date: 2025-05-07 19:39:59 UTC


waldronlab/GSEABenchmarkeR

Message: use Authors@R

Author: LiNk-NY

Date: 2025-05-07 19:35:46 UTC


waldronlab/GSEABenchmarkeR

Message: add _pkgdown.yml and .github/workflows/pr_check.yml GHA

Author: LiNk-NY

Date: 2025-05-07 19:32:24 UTC


waldronlab/HGNCREST

Message: version bump 0.99.5

Author: LiNk-NY

Date: 2025-05-07 15:57:43 UTC


waldronlab/HGNCREST

Message: .gitignore html

Author: LiNk-NY

Date: 2025-05-07 15:57:38 UTC


hpages/hovernethelp

Message: update minicluster/JOURNAL_OF_RUNS.txt

Author: Hervé Pagès

Date: 2025-05-06 23:28:36 UTC


waldronlab/TENxIO

Message: use integrated HTML sessionInfo

Author: LiNk-NY

Date: 2025-05-06 23:17:29 UTC


waldronlab/XeniumIO

Message: version bump 1.1.2

Author: LiNk-NY

Date: 2025-05-06 22:23:23 UTC


waldronlab/XeniumIO

Message: update README.md

Author: LiNk-NY

Date: 2025-05-06 22:23:02 UTC


waldronlab/XeniumIO

Message: add expandable sessionInfo in HTML

Author: LiNk-NY

Date: 2025-05-06 22:22:50 UTC


waldronlab/TENxIO

Message: version bump 1.11.3

Author: LiNk-NY

Date: 2025-05-06 21:29:03 UTC


waldronlab/TENxIO

Message: add _pkgdown.yml and .github/workflows/pr_check.yml GHA

Author: LiNk-NY

Date: 2025-05-06 21:27:10 UTC


waldronlab/curatedOvarianData

Message: version bump 1.47.2

Author: LiNk-NY

Date: 2025-05-05 20:56:03 UTC


waldronlab/curatedOvarianData

Message: rename CHANGELOG and reformat NEWS.md

Author: LiNk-NY

Date: 2025-05-05 20:55:56 UTC


waldronlab/curatedOvarianData

Message: update .Rbuildignore and .gitignore

Author: LiNk-NY

Date: 2025-05-05 20:55:37 UTC


waldronlab/curatedOvarianData

Message: add R version to fix NOTE

Author: LiNk-NY

Date: 2025-05-05 20:41:13 UTC


waldronlab/curatedOvarianData

Message: fix URL in _pkgdown.yml

Author: LiNk-NY

Date: 2025-05-05 20:41:03 UTC


Bioconductor/h5mread

Message: bump x.y.z version to odd y following creation of RELEASE_3_21 branch

Author: A Wokaty

Date: 2025-04-15 17:45:26 UTC


Bioconductor/h5mread

Message: bump x.y.z version to even y prior to creation of RELEASE_3_21 branch

Author: A Wokaty

Date: 2025-04-15 17:45:26 UTC


Bioconductor/S4Arrays

Message: bump x.y.z version to odd y following creation of RELEASE_3_21 branch

Author: A Wokaty

Date: 2025-04-15 17:15:41 UTC


Bioconductor/S4Arrays

Message: bump x.y.z version to even y prior to creation of RELEASE_3_21 branch

Author: A Wokaty

Date: 2025-04-15 17:15:41 UTC


Bioconductor/HDF5Array

Message: bump x.y.z version to odd y following creation of RELEASE_3_21 branch

Author: A Wokaty

Date: 2025-04-15 14:58:57 UTC


Bioconductor/HDF5Array

Message: bump x.y.z version to even y prior to creation of RELEASE_3_21 branch

Author: A Wokaty

Date: 2025-04-15 14:58:57 UTC


Bioconductor/HDF5Array

Message: update NEWS

Author: Hervé Pagès

Date: 2025-04-15 01:35:24 UTC


Bioconductor/HDF5Array

Message: HDF5Array 1.35.17

Author: Hervé Pagès

Date: 2025-04-15 01:12:05 UTC


seandavi/BiocBuildDB

Message: Clarify that the package is used to help build a database….

Author: Sean Davis

Date: 2025-03-20 02:00:22 UTC


shbrief/curatedMetagenomicDataODM

Message: Update body_site_details

Author: krlong68

Date: 2025-03-18 20:02:13 UTC


seandavi/awesome-cancer-variant-resources

Message: Merge pull request #7 from lgeistlinger/master

Author: Sean Davis

Date: 2025-03-06 23:04:53 UTC


seandavi/awesome-cancer-variant-resources

Message: add AlphaMissense

Author: lgeistlinger

Date: 2025-03-06 22:14:12 UTC


seandavi/refinebioc

Message: Merge pull request #17 from ttriche/patch-1

Author: Sean Davis

Date: 2025-03-04 23:28:32 UTC


Bioconductor/BiocHubsIngestR

Message: Bump version

Author: Alexandru Mahmoud

Date: 2025-02-27 17:00:06 UTC


seandavi/refinebioc

Message: Update README.md

Author: Tim Triche, Jr.

Date: 2025-02-27 16:02:51 UTC


Bioconductor/BiocHubsIngestR

Message: Update part size

Author: Alexandru Mahmoud

Date: 2025-02-27 15:19:15 UTC


Bioconductor/BiocHubsIngestR

Message: Test multi-part upload

Author: Alexandru Mahmoud

Date: 2025-02-26 19:27:57 UTC


seandavi/refinebioc

Message: try fixing email on gh actions

Author: Sean Davis

Date: 2025-02-21 04:03:51 UTC


seandavi/refinebioc

Message: replace knitr with quarto

Author: Sean Davis

Date: 2025-02-21 03:41:49 UTC


seandavi/refinebioc

Message: fix vignette build

Author: Sean Davis

Date: 2025-02-21 03:37:35 UTC


shbrief/curatedMetagenomicDataODM

Message: Add dictionaries for “ancestry_details”, “body_site_details”, and “disease_details”; add Svetlana to curator list

Author: krlong68

Date: 2025-02-18 19:09:29 UTC


seandavi/state-cancer-profile-scraper

Message: Clarify readme intro

Author: Sean Davis

Date: 2025-02-11 00:18:39 UTC


seandavi/state-cancer-profile-scraper

Message: Add update frequency

Author: Sean Davis

Date: 2025-02-10 23:02:05 UTC


seandavi/state-cancer-profile-scraper

Message: Update README.md

Author: Sean Davis

Date: 2025-02-10 22:58:20 UTC


seandavi/state-cancer-profile-scraper

Message: Add clear download link.

Author: Sean Davis

Date: 2025-02-10 22:46:07 UTC


seandavi/state-cancer-profile-scraper

Message: update ignores

Author: Sean Davis

Date: 2025-02-10 22:41:38 UTC


shbrief/curatedMetagenomicDataODM

Message: Add non-NCIT terms to “treatment” dictionary; create .owl files for “probing_pocket_depth”, “smoker”, and “feces_phenotype” terms

Author: krlong68

Date: 2025-02-07 13:12:20 UTC


Bioconductor/BiocHubsIngestR

Message: Tweaks

Author: Alexandru Mahmoud

Date: 2025-01-23 19:29:26 UTC


Bioconductor/h5mread

Message: h5mread 0.99.4

Author: Hervé Pagès

Date: 2025-01-21 21:44:07 UTC


Bioconductor/BiocHubsIngestR

Message: Remove License added by tempalte

Author: Alexandru Mahmoud

Date: 2025-01-10 20:59:10 UTC


waldronlab/RaggedExperiment_SoftNote

Message: set actions/cache to v4

Author: Marcel Ramos Pérez

Date: 2025-01-06 21:28:05 UTC


waldronlab/PublicDataResources

Message: set actions/cache to v4

Author: Marcel Ramos Pérez

Date: 2025-01-06 21:26:21 UTC


waldronlab/enrichOmics

Message: set actions/cache to v4

Author: Marcel Ramos Pérez

Date: 2025-01-06 21:24:40 UTC


vjcitn/xenLite

Message: Merge pull request #4 from vjcitn/devel

Author: Vince Carey

Date: 2024-11-27 11:38:02 UTC


vjcitn/xenLite

Message: Merge pull request #3 from vjcitn/vincedev

Author: Vince Carey

Date: 2024-11-27 11:36:00 UTC


waldronlab/HGNChelper

Message: update NEWS

Author: Levi Waldron

Date: 2024-11-16 16:08:23 UTC


waldronlab/HGNChelper

Message: Bump version, update maps, suppress warning in splitstachshape::cSplit, update HGNC URL in documentation

Author: Levi Waldron

Date: 2024-11-16 15:53:39 UTC


waldronlab/HGNChelper

Message: update url, refers to #1

Author: LiNk-NY

Date: 2024-11-11 15:02:53 UTC


vjcitn/xenLite

Message: Merge pull request #2 from vjcitn/RELEASE_3_20

Author: Vince Carey

Date: 2024-10-31 05:07:15 UTC


vjcitn/YESCDS

Message: update the pkgdown site

Author: vjcitn

Date: 2024-10-30 12:26:08 UTC


vjcitn/xenLite

Message: bump x.y.z version to odd y following creation of RELEASE_3_20 branch

Author: J Wokaty

Date: 2024-10-29 15:33:39 UTC


vjcitn/xenLite

Message: bump x.y.z version to even y prior to creation of RELEASE_3_20 branch

Author: J Wokaty

Date: 2024-10-29 15:33:39 UTC


vjcitn/YESCDS

Message: passing check

Author: vjcitn

Date: 2024-08-02 14:05:14 UTC


vjcitn/YESCDS

Message: moving along, dropping mut_stuff for now

Author: vjcitn

Date: 2024-08-02 11:34:25 UTC


vjcitn/YESCDS

Message: update compressed data

Author: vjcitn

Date: 2024-08-02 11:24:15 UTC


vjcitn/YESCDS

Message: adding hcc code causing problem with devtools::document?

Author: vjcitn

Date: 2024-08-02 09:50:51 UTC


ccb-hms/scConform

Message: change param names and add ctb

Author: DanielaCorbetta

Date: 2024-07-25 15:02:51 UTC


ccb-hms/scConform

Message: add pkgdown css

Author: DanielaCorbetta

Date: 2024-07-02 20:17:11 UTC


ccb-hms/scConform

Message: Merge branch ‘main’ of https://github.com/ccb-hms/scConform

Author: DanielaCorbetta

Date: 2024-06-24 19:10:27 UTC


ccb-hms/scConform

Message: rm import foreach

Author: DanielaCorbetta

Date: 2024-06-24 19:10:25 UTC


ccb-hms/scConform

Message: Update check-bioc.yml

Author: Daniela Corbetta

Date: 2024-06-24 16:49:55 UTC


waldronlab/HGNChelper

Message: version bump

Author: Levi Waldron

Date: 2024-05-18 04:16:43 UTC


waldronlab/HGNChelper

Message: Documentation syntax

Author: Levi Waldron

Date: 2024-05-18 04:16:35 UTC


seandavi/BiocBuildDB

Message: Update process_new_build_reports.yaml

Author: Sean Davis

Date: 2024-02-29 18:07:08 UTC


seandavi/BiocBuildDB

Message: Update process_new_build_reports.yaml

Author: Sean Davis

Date: 2024-02-29 18:04:58 UTC


seandavi/BiocBuildDB

Message: Update process_new_build_reports.yaml

Author: Sean Davis

Date: 2024-02-29 17:59:24 UTC


seandavi/awesome-cancer-variant-resources

Message: Merge pull request #6 from CompOnco/master

Author: Sean Davis

Date: 2023-10-24 15:18:04 UTC


seandavi/awesome-cancer-variant-resources

Message: Update README.md

Author: Aedin Culhane

Date: 2023-10-24 15:04:59 UTC


waldronlab/MultiAssayExperiment.TCGA

Message: standardize barcodes for curation files

Author: LiNK-NY

Date: 2023-05-16 22:14:53 UTC


waldronlab/MultiAssayExperiment.TCGA

Message: use file instead of path

Author: LiNK-NY

Date: 2023-05-16 22:14:30 UTC


waldronlab/MultiAssayExperiment.TCGA

Message: add version 2.1.1 section

Author: LiNK-NY

Date: 2023-05-02 19:14:16 UTC


waldronlab/MultiAssayExperiment.TCGA

Message: allow flexible runs for only colData

Author: LiNK-NY

Date: 2023-05-02 19:10:57 UTC


waldronlab/MultiAssayExperiment.TCGA

Message: minor updates

Author: LiNK-NY

Date: 2023-05-02 19:09:53 UTC


waldronlab/RaggedExperiment_SoftNote

Message: update authors, CITATION, DESCRIPTION

Author: LiNk-NY

Date: 2023-03-16 22:24:08 UTC


waldronlab/RaggedExperiment_SoftNote

Message: use kable instead of md table

Author: LiNk-NY

Date: 2023-03-16 19:37:43 UTC


waldronlab/RaggedExperiment_SoftNote

Message: update titles

Author: LiNk-NY

Date: 2023-03-16 17:57:00 UTC


waldronlab/RaggedExperiment_SoftNote

Message: add figures

Author: LiNk-NY

Date: 2023-03-16 17:13:01 UTC


vjcitn/BiocOncoTK

Message: Merge branch ‘master’ of https://github.com/vjcitn/BiocOncoTK

Author: vjcitn

Date: 2023-02-05 20:26:03 UTC


vjcitn/BiocOncoTK

Message: add the Dockerfile for Dockstore

Author: vjcitn

Date: 2023-02-05 20:25:32 UTC


vjcitn/BiocOncoTK

Message: updating docker reference

Author: vjcitn

Date: 2023-02-05 18:16:52 UTC


vjcitn/BiocOncoTK

Message: adding test parameter file

Author: vjcitn

Date: 2023-02-05 13:58:20 UTC


vjcitn/BiocOncoTK

Message: fix wdl

Author: vjcitn

Date: 2023-02-05 13:42:51 UTC


waldronlab/PublicDataResources

Message: magrittr import

Author: lwaldron

Date: 2021-04-29 10:43:54 UTC


waldronlab/PublicDataResources

Message: RELEASE_3_12, chunk names

Author: lwaldron

Date: 2021-04-29 10:22:10 UTC


waldronlab/PublicDataResources

Message: use release, names for main sections

Author: lwaldron

Date: 2021-04-29 09:58:41 UTC


vjcitn/TxRegInfra2

Message: revise vignette to use $run

Author: Vince Carey

Date: 2020-12-31 01:01:51 UTC


vjcitn/TxRegInfra2

Message: synch with gh-pages

Author: Vince Carey

Date: 2020-12-26 02:26:54 UTC


vjcitn/TxRegInfra2

Message: update content

Author: Vince Carey

Date: 2020-12-26 02:01:30 UTC


vjcitn/TxRegInfra2

Message: Merge branch ‘main’ into gh-pages – bring in README.md

Author: Vince Carey

Date: 2020-12-26 01:41:10 UTC


vjcitn/TxRegInfra2

Message: update README

Author: Vince Carey

Date: 2020-12-26 01:40:38 UTC


waldronlab/enrichOmics

Message: Merge branch ‘master’ of https://github.com/waldronlab/enrichOmics

Author: lgeistlinger

Date: 2020-09-25 21:15:25 UTC


waldronlab/enrichOmics

Message: post-conference updates

Author: lgeistlinger

Date: 2020-09-25 21:14:58 UTC


waldronlab/enrichOmics

Message: Merge pull request #11 from waldronlab/lwaldron-patch-1

Author: lgeistlinger

Date: 2020-07-28 17:55:44 UTC


waldronlab/enrichOmics

Message: Use bioconductor/bioconductor_docker:bioc2020.1

Author: Levi Waldron

Date: 2020-07-28 17:48:35 UTC


waldronlab/PublicDataResources

Message: add link to slides

Author: Levi Waldron

Date: 2020-07-28 07:42:23 UTC


seandavi/awesome-cancer-variant-resources

Message: Merge pull request #3 from MuhammedHasan/patch-1

Author: Sean Davis

Date: 2019-03-13 12:05:47 UTC