Part of this function is from the RTCGAToolbox. It aims to extract the file
name used inside of the getFirehoseData function.
The arguments of the function parallel those in the
getFirehoseData function. It is only available for
select data types.
Usage
getFileName(
disease,
runDate = "20160128",
dataType = c("CNASNP", "CNVSNP", "CNAseq", "CNACGH", "Mutation")
)
Arguments
- disease
The TCGA cancer disease code, e.g., "COAD"
- runDate
The single string used in the getFirehoseData
function (default "20160128")
- dataType
A single character vector (default "CNASNP") indicating the
data type for which to get the source file name
Value
A single character file name
Examples
getFileName("COAD", dataType = "CNASNP")
#> [1] "gdac.broadinstitute.org_COAD.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.Level_3.2016012800.0.0.tar.gz"