Defunct TCGAutils functions

mirToRanges is defunct and will be removed in the next release. The mirbase.db package is currently deprecated in RELEASE_3_21.

Usage

mirToRanges(obj, keep.assay = FALSE, unmapped = TRUE)

Arguments

obj

A MultiAssayExperiment object obtained from curatedTCGAData

keep.assay

logical (default FALSE) Whether to keep the SummarizedExperiment assays that have been converted to RangedSummarizedExperiment

unmapped

logical (default TRUE) Include an assay of data that was not able to be mapped in reference database