Get BEDs associated with BEDset

Return a tibble of BED files in BEDset given its id.

bb_beds_in_bedset(bedbase, bedset_id)

Arguments

bedbase

BEDbase() object

bedset_id

integer(1) BEDset record identifier

Value

tibble of BED files in BEDset

Examples

bedbase <- BEDbase()
#> 665778 BED files available.
ex_bedset <- bb_example(bedbase, "bedset")
bb_beds_in_bedset(bedbase, ex_bedset$id)
#> # A tibble: 994 × 229
#>    name  genome_alias genome_digest bed_compliance data_format compliant_columns
#>    <chr> <chr>        <chr>         <chr>          <chr>       <chr>            
#>  1 enco… hg38         EiFob05aCWgV… bed6+4         encode_nar… 6                
#>  2 enco… hg38         jFm0Uca8a7vK… bed6+4         encode_nar… 6                
#>  3 enco… hg38         EiFob05aCWgV… bed6+4         encode_nar… 6                
#>  4 enco… hg38         EiFob05aCWgV… bed6+4         encode_nar… 6                
#>  5 enco… hg38         EiFob05aCWgV… bed6+4         encode_nar… 6                
#>  6 enco… hg38         EiFob05aCWgV… bed6+4         encode_nar… 6                
#>  7 enco… hg38         EiFob05aCWgV… bed6+4         encode_nar… 6                
#>  8 enco… hg38         jFm0Uca8a7vK… bed6+5         bed_like    6                
#>  9 enco… hg38         EiFob05aCWgV… bed6+4         encode_nar… 6                
#> 10 enco… hg38         EiFob05aCWgV… bed6+4         encode_nar… 6                
#> # ℹ 984 more rows
#> # ℹ 223 more variables: non_compliant_columns <chr>, id <chr>,
#> #   description <chr>, submission_date <chr>, last_update_date <chr>,
#> #   is_universe <chr>, license_id <chr>, annotation.species_name <chr>,
#> #   annotation.species_id <chr>, annotation.genotype <chr>,
#> #   annotation.phenotype <chr>, annotation.description <chr>,
#> #   annotation.cell_type <chr>, annotation.cell_line <chr>, …