Mirroring Bioconductor and building a DuckDB code index for AI models

Guest post. This post by Marcel Ramos was published on his site https://link-ny.github.io.

The post describes mirroring Bioconductor’s 3.23 and 3.24 source packages, indexing every package with scip-r, and packaging the index as a DuckDB database that an AI model can query.