Get relevant metadata for each SRR using SRP

get_metadata(srp)

Arguments

srp

An SRP as a string beginning with the prefix "SRP"

Value

a data.frame with sampleID, sequencing_platform, number_reads, and avg_read_length

Details

Supports studies with up to 99,990 runs. See Examples for the template used for curatedMetagenomicData. The data.frame has five columns:

1. "sampleID" Sample ID. 2. "sequencing_platform": Sequencing platform used. 3. "number_reads": Number of reads. If there are multiple SRRs, the sum of number_reads is used. 4. "avg_read_length": Average read length If there are multiple SRRs, the mean avg_read_length is used. 5. "SRRs": A list of SRRs associated with the sample ID.