IGC EXpression Project for Oncology
GSE2109_eset.RdEXpression Project for Oncology, International Genomics Consortium, www.intgen.org
Usage
data( GSE2109_eset )Format
experimentData(eset):
Experiment data
Experimenter name: EXpression Project for Oncology, International Genomics Consortium, www.intgen.org
Laboratory: expO, IGC 2005
Contact information:
Title: IGC EXpression Project for Oncology
URL:
PMIDs: PMID unknown
Abstract: A 8 word abstract is available. Use 'abstract' method.
Information is available on: preprocessing
notes:
platform_title:
[HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array
platform_shorttitle:
Affymetrix HG-U133Plus2
platform_summary:
hgu133plus2
platform_manufacturer:
Affymetrix
platform_distribution:
commercial
platform_accession:
GPL570
platform_technology:
in situ oligonucleotide
Preprocessing: frma
featureData(eset):
An object of class 'AnnotatedDataFrame'
featureNames: A1BG A1BG-AS1 ... ZZZ3 (19816 total)
varLabels: probeset gene
varMetadata: labelDescription
Details
assayData: 19816 features, 204 samples
Platform type: hgu133plus2
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Available sample meta-data:
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alt_sample_name:
Length Class Mode
204 character character
sample_type:
benign borderline tumor
2 8 194
histological_type:
Length Class Mode
204 character character
primarysite:
other ov NA's
23 178 3
summarygrade:
high low NA's
91 31 82
summarystage:
early late NA's
37 87 80
tumorstage:
1 2 3 4 NA's
20 14 58 18 94
substage:
a b c NA's
17 22 79 86
grade:
1 2 3 4 NA's
11 20 83 8 82
age_at_initial_pathologic_diagnosis:
Min. 1st Qu. Median Mean 3rd Qu. Max.
25.00 45.00 55.00 58.82 65.00 85.00
batch:
Length Class Mode
204 character character
uncurated_author_metadata:
Length Class Mode
204 character character