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Classification of ovarian tumor samples

GSE6822_eset.Rd

Ouellet V, Provencher DM, Maugard CM, Le Page C, Ren F, Lussier C, Novak J, Ge B, Hudson TJ, Tonin PN, Mes-Masson A-M: Discrimination between serous low malignant potential and invasive epithelial ovarian tumors using molecular profiling. Oncogene 2005, 24:4672-4687.

Usage

data( GSE6822_eset )

Format


experimentData(eset):
Experiment data
  Experimenter name: Ouellet V, Provencher DM, Maugard CM, Le Page C, Ren F, Lussier C, Novak J, Ge B, Hudson TJ, Tonin PN, Mes-Masson A-M: Discrimination between serous low malignant potential and invasive epithelial ovarian tumors using molecular profiling. Oncogene 2005, 24:4672-4687.
  Laboratory: Ouellet, Mes-Masson 2005
  Contact information:
  Title: Classification of ovarian tumor samples
  URL:
  PMIDs: PMID unknown

  Abstract: A 40 word abstract is available. Use 'abstract' method.
  Information is available on: preprocessing
  notes:
   platform_title:
      [Hu6800] Affymetrix Human Full Length HuGeneFL Array
   platform_shorttitle:
      Affymetrix Hu6800
   platform_summary:
      hu6800
   platform_manufacturer:
      Affymetrix
   platform_distribution:
      commercial
   platform_accession:
      GPL80
   platform_technology:
      in situ oligonucleotide

Preprocessing: rma
featureData(eset):
An object of class 'AnnotatedDataFrame'
  featureNames: A2M AADAC ... ZYX (5251 total)
  varLabels: probeset gene
  varMetadata: labelDescription

Details


assayData: 5251 features, 66 samples
Platform type: hu6800
---------------------------
Available sample meta-data:
---------------------------

alt_sample_name:
   Length     Class      Mode
       66 character character

sample_type:
borderline   cellline      tumor
         6          2         58

histological_type:
   Length     Class      Mode
       66 character character

primarysite:
ov
66

summarygrade:
high  low NA's
  40   15   11

grade:
   1    2    3 NA's
   1   14   40   11

batch:
   Length     Class      Mode
       66 character character

uncurated_author_metadata:
   Length     Class      Mode
       66 character character