Package index

All functions

HMP16SData

16S rRNA sequencing data from the Human Microbiome Project

V13()

HMP 16S rRNA sequencing data for variable regions 1–3

V35()

HMP 16S rRNA sequencing data for variable regions 3–5

as_phyloseq()

Coerce a SummarizedExperiment object to a phyloseq object

attach_dbGaP()

Attach dbGaP metadata to a SummarizedExperiment object

dictionary

A data dictionary describing dbGaP metadata variables

kable_one()

Produce a summary HTML table of key demographic variables

table_one()

Produce a summary data.frame of key demographic variables