PublicMicrobiomeProjects with Topics: r01ca230551
A list of repositories discovered on GitHub. The table is sortable by clicking on headers and searchable via the search box.
| Repository | Owner | Description | Stars | Last Updated |
|---|---|---|---|---|
curatedMetagenomicData
|
waldronlab | Curated Metagenomic Data of the Human Microbiome | 142 | 2025-09-26 |
|
lefser
|
waldronlab | R implementation of the LEfSe method | 59 | 2025-04-22 |
|
curatedMetagenomicDataAnalyses
|
waldronlab | Analyses in R and Python Using curatedMetagenomicData | 31 | 2025-10-09 |
|
curatedMetagenomicDataCuration
|
waldronlab | Sample Metadata Curation for curatedMetagenomicData | 29 | 2025-09-24 |
|
MicrobiomeWorkshop
|
waldronlab | A workshop on microbiome analysis using Bioconductor | 15 | 2019-06-20 |
|
BugSigDBcuration
|
waldronlab | For documenting issues related to BugSigDB curation. | 15 | 2025-03-27 |
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HMP16SData
|
waldronlab | 16S rRNA Sequencing Data from the Human Microbiome Project | 10 | 2025-05-05 |
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curatedMetagenomicsNextflow
|
seandavi | Curated Metagenomics Data Nextflow workflows | 8 | 2025-07-03 |
|
BugSigDB
|
waldronlab | A microbial signatures database | 8 | 2025-10-13 |
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bugphyzz
|
waldronlab | Harmonized annotation of microbial physiology | 6 | 2025-04-16 |
|
bugsigdbr
|
waldronlab | R-side access to published microbial signatures from BugSigDB | 5 | 2025-05-29 |
|
bugSigSimple
|
waldronlab | Simple exploratory analysis of curated microbe signatures | 4 | 2025-08-11 |
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curatedMetagenomicDataTerminal
|
waldronlab | A Command-Line Interface for curatedMetagenomicData | 3 | 2021-11-13 |
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lefserBenchmarking
|
shbrief | Benchmarking examples of lefser against LEfSe and microbiomeMarker | 3 | 2024-11-19 |
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BugSigDBExports
|
waldronlab | BugSigDB data files | 3 | 2025-10-12 |
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BugSigDBStats
|
waldronlab | BugSigDB Stats and Analysis | 2 | 2025-08-06 |
|
curatedMetagenomicDataPipeline
|
waldronlab | The Preprocessing Pipeline for curatedMetagenomicData | 2 | 2021-10-14 |
|
MicrobiomeBenchmarkDataPrep
|
waldronlab | Preparation of datasets for MicrobiomeBenchmarkData | 1 | 2024-09-02 |
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curatedMetagenomicDataODM
|
shbrief | Genestack's Open Data Management (ODM) setup for curatedMetagenomicData curation | 1 | 2025-07-28 |
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bugphyzzExports
|
waldronlab | 1 | 2025-10-05 | |
|
MicrobiomeBenchmarkDataLefse
|
waldronlab | Running lefse with lefse-conda, lefser, and microbiomeMarker | 1 | 2024-09-25 |
|
taxPPro
|
waldronlab | 1 | 2025-06-30 | |
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bugphyzzAnalyses
|
waldronlab | Analyses with data and signatures imported from the bugphyzz package. | 1 | 2024-06-28 |
|
MicrobiomeProject
|
bd4everyone | Tracking for project R01ca230551: Exploiting Public Metagenomic Data to Uncover Cancer-Microbiome Relationships | 0 | 2025-08-11 |
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nextflow_telemetry
|
seandavi | Python web api for nextflow web callbacks | 0 | 2025-03-13 |
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taxPProValidation
|
waldronlab | Code for validation analyses for prediction of annotations in bugphyzz | 0 | 2024-07-05 |
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PublicMicrobiomeProject
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waldronlab | Tracking for project R01ca230551: Exploiting Public Metagenomic Data to Uncover Cancer-Microbiome Relationships | 0 | 2025-08-14 |
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BugSigDBEnrich
|
waldronlab | A ShinyApp to perform enrichemnt analysis with BugSigDB signatures. | 0 | 2025-01-21 |
|
BugSigDBPaper
|
waldronlab | Figures and Tables for the BugSigDB paper | 0 | 2023-10-19 |
|
curatedMetagenomicDataShinyApp
|
waldronlab | ShinyApp for curatedMetagenomicDataCuration | 0 | 2021-11-29 |
|
ncbitaxon
|
waldronlab | Hosting the NCBI taxnomy | 0 | 2024-08-21 |
|
MicrobiomeBenchmarkData
|
waldronlab | Data for benchmarking in microbiome research. | 0 | 2025-04-16 |
|
cMDMeta
|
waldronlab | Dashboard for cMD | 0 | 2024-12-28 |
|
MicrobiomeBenchmarkDataAnalyses
|
waldronlab | Analyses using the datasets provided by the MicrobiomeBenchmarkData package. | 0 | 2025-04-18 |