Fixed a missing anchor in @inheritParams documentation
The TENxH5 constructor properly validates remote files with .validateRanges
imported slotNames from the methods package
Changes in version 1.8.0
New features
The import method for h5 files now includes all rowData which typically includes “ID”, “Symbol”, and “Type” columns.
Bug fixes and minor improvements
rownames are set to first column in the features.tsv.gz data (rownames for h5 files are determined by HDF5Array::TENxMatrix)
TENxH5 now tests whether there is a /matrix/features/interval dataset in the h5 file. It sets ranges to NA_character_ when interval data is not found.
Changes in version 1.6.0
Bug fixes and minor improvements
Use rowData from filtered SingleCellExperiment object (@MalteThodberg, #5)
Add examples to TENxFileList documentation and improve constructor function
Changes in version 1.4.0
Bug fixes and minor improvements
Skip unit tests when remote H5 access is not configured.
Changes in version 1.2.0
New features
TENxTSV class has been added to handle compressed and uncompressed TSV files.
Bug fixes and minor improvements
The import method for TENxFileList was returning a nested SummarizedExperiment within the SingleCellExperiment. The counts and assay(..., i="counts") methods should only return the bare Matrix rather than the embedded SummarizedExperiment (@dgastn, #2).