Package index • TENxIO

All functions

metadata(<TENxFile>): TENxFile: General purpose class for 10X files

TENxFile(): TENxFile constructor function

path(<TENxFileList>) decompress(<TENxFileList>) import(<TENxFileList>,<ANY>,<ANY>) metadata(<TENxFileList>): TENxFileList: A list-like representation for TENxFiles

TENxFileList(): TENxFileList: Represent groups of files from 10X Genomic

import(<TENxFragments>,<ANY>,<ANY>): TENxFragments: A class to represent fragments data as GRanges

TENxFragments(): TENxFragments: Import fragments files from 10X

rowData(<TENxH5>) dim(<TENxH5>) dimnames(<TENxH5>) genome(<TENxH5>) rowRanges(<TENxH5>) import(<TENxH5>,<ANY>,<ANY>) show(<TENxH5>): TENxH5: The HDF5 file representation class for 10X Data

TENxH5(): TENxH5: Represent H5 files from 10X

TENxIO TENxIO-package: TENxIO: A Bioconductor package for importing 10X Genomics files

import(<TENxMTX>,<ANY>,<ANY>): TENxMTX: The Matrix Market representation class for 10X Data

TENxMTX(): TENxMTX: Represent Matrix Market Format Files from 10X

import(<TENxPeaks>,<ANY>,<ANY>) `annotation<-`(<SingleCellExperiment>,<ANY>) annotation(<SingleCellExperiment>): TENxPeaks: The class to represent 10x Peaks files

TENxPeaks(): Import 10x peak annotation files from 10x

import(<TENxTSV>,<ANY>,<ANY>) TENxTSV() metadata(<TENxTSV>): TENxTSV: A class to represent 10x tab separated values files