Get Taxon Signatures — getTaxonSignatures • bugphyzz

getTaxonSignatures returns the names of all of the signatures associated with a particular taxon. More details can be found in the main bugphyzz vignette; please run browseVignettes("bugphyzz").

getTaxonSignatures(tax, bp, ...)

Arguments

tax: A valid NCBI ID or taxon name. If taxon name is used, the argument taxIdType = "Taxon_name" must also be used.
bp: List of data.frames imported with importBugphyzz.
...: Arguments passed to makeSignatures.

Value

A character vector with the names of the signatures for a taxon.

Examples

taxid <- "562"
taxonName <- "Escherichia coli"
bp <- importBugphyzz()
#> Using data downloaded on 2024-08-26 15:06:32.
sig_names_1 <- getTaxonSignatures(taxid, bp)
sig_names_2 <- getTaxonSignatures(taxonName, bp, taxIdType = "Taxon_name")