Microbe Set Enrichment

Source: R/enrichment.R

microbeSetEnrichment runs ORA (Fisher's exact test) comparing a set of microbes (character vector), a reference (character vector), and a list of signatures (list of vectors). Furthermore, microbeSetEnrichment adjusts p values (FDR), and calculate odd ratios.

microbeSetEnrichment(set, reference, sigs)

Arguments

set

A character vector.

reference

A character vector.

sigs

A list of character vectors.

Value

A data.frame.