Function reference • bugphyzzAnalyses

All functions
`calcPredStats()`	Cacl prediciton stats
`classif2Table()`	Taxize classification to data frame
`concatenateEvenSigs()`	Concatenate even signatures
`createDT()`	Create DataTable
`dbEn2()`	Run enrichment using the dbBact approach
`dbHt()`	Plot heatmap of output of dbEn2
`dbMat()`	Create matrix for dbBact enrichment approach
`elbows()`	Elbows
`filterDbEnRes()`	Filter Result of dbBact Enrichment
`filterEvenDat()`	Filter even dataset from BugSigDB
`filterEvenSignatures()`	Filter even signatures from experiments
`filterTaxa()`	Filter taxa based on abundance values per sample
`getCatSignatures()`	Concatenate signatures of a BugSigDB data.frame
`getPairedSigs()`	Get paired signatures
`getSets()`	Get Sets
`importBiosis()`	Import biosis data
`importNYCHANES()`	Import the NYCHANES file
`importTMS()`	Import typical microbiome signatures
`importTaxids()`	Import taxids for MicrobiomeBenchmarkData
`import_taxids()`	Import taxids
`limmaVoom()`	Normalize assay with limma::voom
`microbeSetEnrichment()`	Microbe Set Enrichment
`myDT()`	My DataTable
`myDataTable()`	Print datatable with my default options
`plotEnrichmentRes()`	Plot Enrichment Results
`runEnrichment()`	Run enrichment
`taxTable2taxid()`	Convert taxonomic names to NCBI taxids
`validRanks()`	Valid ranks

Reference