All functions

browseSignature()

Displaying BugSigDB signatures pages in a web browser

browseTaxon()

Displaying BugSigDB taxon pages in a web browser

extractTaxLevel()

Extract specific taxonomic levels from a microbe signature

getMetaSignatures()

Obtain meta-signatures for a column of interest

getOntology()

Obtain the EFO and UBERON ontology

getSignatures()

Obtain microbe signatures from BugSigDB

importBugSigDB()

Obtain published microbial signatures from bugsigdb.org

restrictTaxLevel()

Restrict microbe signatures to specific taxonomic levels

subsetByOntology()

Ontology-based subsetting of BugSigDB signatures

writeGMT()

Write microbe signatures to file in GMT format