Load NCBI tree

data('tree_list')
ncbi_Tree <- as.Node(tree_list)

Load living tree project tree and tip and node data:

ltp <- ltp()

Session information

sessioninfo::session_info()
#> ─ Session info ───────────────────────────────────────────────────────────────
#>  setting  value
#>  version  R version 4.4.1 (2024-06-14)
#>  os       Ubuntu 22.04.4 LTS
#>  system   x86_64, linux-gnu
#>  ui       X11
#>  language en
#>  collate  en_US.UTF-8
#>  ctype    en_US.UTF-8
#>  tz       Etc/UTC
#>  date     2024-11-21
#>  pandoc   3.2 @ /usr/bin/ (via rmarkdown)
#> 
#> ─ Packages ───────────────────────────────────────────────────────────────────
#>  package     * version  date (UTC) lib source
#>  ape           5.8      2024-04-11 [1] RSPM (R 4.4.0)
#>  bslib         0.8.0    2024-07-29 [1] RSPM (R 4.4.0)
#>  cachem        1.1.0    2024-05-16 [1] RSPM (R 4.4.0)
#>  cli           3.6.3    2024-06-21 [1] RSPM (R 4.4.0)
#>  data.tree   * 1.1.0    2023-11-12 [1] RSPM (R 4.4.0)
#>  desc          1.4.3    2023-12-10 [1] RSPM (R 4.4.0)
#>  digest        0.6.37   2024-08-19 [1] RSPM (R 4.4.0)
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#>  evaluate      1.0.1    2024-10-10 [1] RSPM (R 4.4.0)
#>  fansi         1.0.6    2023-12-08 [1] RSPM (R 4.4.0)
#>  fastmap       1.2.0    2024-05-15 [1] RSPM (R 4.4.0)
#>  fs            1.6.5    2024-10-30 [1] RSPM (R 4.4.0)
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#>  glue          1.8.0    2024-09-30 [1] RSPM (R 4.4.0)
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#>  jsonlite      1.8.9    2024-09-20 [1] RSPM (R 4.4.0)
#>  knitr         1.49     2024-11-08 [1] RSPM (R 4.4.0)
#>  lattice       0.22-6   2024-03-20 [2] CRAN (R 4.4.1)
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#>  rlang         1.1.4    2024-06-04 [1] RSPM (R 4.4.0)
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#>  sessioninfo   1.2.2    2021-12-06 [1] RSPM (R 4.4.0)
#>  stringi       1.8.4    2024-05-06 [1] RSPM (R 4.4.0)
#>  systemfonts   1.1.0    2024-05-15 [1] RSPM (R 4.4.0)
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#>  yaml          2.3.10   2024-07-26 [1] RSPM (R 4.4.0)
#> 
#>  [1] /usr/local/lib/R/site-library
#>  [2] /usr/local/lib/R/library
#> 
#> ──────────────────────────────────────────────────────────────────────────────