set_DA_methods_list creates a predefined list of methods for the benchdamic framework. The output of this function should be the input for the runDA function.

set_DA_methods_list(conditions_col, conditions)

Arguments

conditions_col

Character string indicating the name of the column containing the conditions of the samples in sample_metadata/colData.

conditions

A named character vector. The names must be "condB" and "condA". condB indicates the reference/numerator/control and condA indicates the target/denominator/treatment. For example: c(condB = 'control', condA = 'treatment')

Value

A list of DA methods for benchdamic.