Package index • MicrobiomeBenchmarkDataAnalyses

All functions
`DA_ZINQ()`	ZINQ for benchdamic
`DA_ancombc()`	DA_ancombc
`DA_lefse()`	Lefser method
`DA_wilcox()`	Wilcox test for differential abundance
`MicrobiomeBenchmarkDataAnalyses-package` `MicrobiomeBenchmarkDataAnalyses`	MicrobiomeBenchmarkDataAnalyses
`editMiaTaxaNames()`	Edit the taxa names by mia
`filterTaxa()`	Filter taxa based on abundance values per sample
`get_direction_cols()`	Get direction columns
`get_meth_class()`	Methods classification
`lefser2()`	R implementation of the LEfSe method 2
`log2_fold_change()`	Calculate log2 fold change
`norm_clr()`	CLR normalization
`norm_tss()`	TSS normalization
`plot_enrichment()`	Plot enrichment object
`plot_enrichment_2()`	Plot enrichment
`plot_positives()`	Plot positives
`quiet()`	Quiet
`run_DA()`	Run differential abundance methods
`set_DA_methods_list()`	Set list of DA methods
`set_norm_list()`	Set list of normalization methods
`taxize_classification_to_taxonomy_table()`	Taxize classification to a taxonomy table

Reference