Identify the most frequently recurring taxa in bugsigdb

Identify the most frequently recurring taxa in bugsigdb

frequencySigs(sigs, n = 10)

Arguments

sigs

data.frame produced by importBugSigDB

n

Number of top taxa to return

Value

integer vector of top most recurrent taxa

Examples

dat <- bugsigdbr::importBugSigDB()
#> Using cached version from 2022-03-31 12:35:22
dat.select <- bugsigdbr::getSignatures(dat, tax.level = "genus", exact.tax.level=TRUE)
dat.select <- dat.select[grep("UP", names(dat.select))] #only "UP" signatures
frequencySigs(sigs=dat.select, n = 10)
#>  1301   838  1578 29465  1485   816  1350  1678  1654   848 
#>   140   100    99    76    69    66    61    61    54    54