Identify the most frequently recurring taxa in bugsigdb

Identify the most frequently recurring taxa in bugsigdb

frequencySigs(sigs, n = 10)

Arguments

sigs

data.frame produced by importBugSigDB

n

Number of top taxa to return

Value

integer vector of top most recurrent taxa

Examples

dat <- bugsigdbr::importBugSigDB()
#> Using cached version from 2025-05-05 19:21:34
dat.select <- bugsigdbr::getSignatures(dat, tax.level = "genus", exact.tax.level=TRUE)
dat.select <- dat.select[grep("UP", names(dat.select))] #only "UP" signatures
frequencySigs(sigs=dat.select, n = 10)
#>   1301   1578    838    816   1678  29465   1485 572511   1350 375288 
#>    384    355    340    331    258    253    204    193    189    187