Package index • cBioPortalData

All functions

removeDataCache(): Deprecated cache helper functions

cBioCache() setCache() removePackCache(): Manage cache / download directories for study data

cBioDataPack(): Obtain pre-packaged data from cBioPortal and represent as a MultiAssayExperiment object

operations(<cBioPortal>): A class for representing the cBioPortal API protocol

cBioPortal() getStudies() clinicalData() molecularProfiles() fetchData() mutationData() molecularData() copyNumberData() searchOps() samplesInSampleLists() sampleLists() allSamples() getSampleInfo() genePanels() getGenePanel() genePanelMolecular() getGenePanelMolecular() geneTable() queryGeneTable() getDataByGenes(): The R interface to the cBioPortal API Data Service

cBioPortalData(): Download data from the cBioPortal API

downloadStudy() untarStudy() loadStudy(): Manually download, untar, and load study tarballs