Package index

Data Retrieval

Functions and data to access the curated datasets

getCuratedBreastDataExprSetList()

getCuratedBreastDataExprSetList

getClinicalData()

Clinical Data Table & Variable Definitions

curatedBreastData_pData

curatedBreastData_pData

Data Processing

Functions to post-process the datasets

processExpressionSetList()

Process a list of S4 expressionSet objects.

processExpressionSet()

Post-process a normalized assayData in an ExpressionSet object

filterAndImputeSamples()

Filter and Impute Samples

filterGenesByVariance()

Filter genes by variance

collapseDupProbes()

Collapse/handle duplicated probes (genes) in a dataset

removeDuplicatedPatients()

Remove duplicated patient samples (samples from the same patient/column ID)