Package index
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cnvEQTL() - CNV-expression association analysis
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cnvGWAS() - Run the CNV-GWAS
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cnvOncoPrint() - OncoPrint plot for CNV regions
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generateGDS() - Produce CNV-GDS for the phenotyped samples
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importLrrBaf() - Import LRR and BAF from text files used in the CNV analysis
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plotEQTL() - Plot EQTL region
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plotManhattan() - Manhattan Plot
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plotRecurrentRegions() - Plot recurrent CNV regions
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populationRanges() - Summarizing CNV ranges across a population
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setupCnvGWAS() - Setup the folders and files to run CNV-GWAS analysis