#bioc-conference-everyone

2022-09-07

Erica Feick (18:54:06): > @Erica Feick has joined the channel

Erica Feick (18:54:06): > set the channel description: rideshare conversations, games suggestions

Erica Feick (18:59:48): > has renamed the channel from “picnic” to “bioc23”

Erica Feick (19:00:17): > set the channel description: Details on BioC23

Erica Feick (19:00:32): > has renamed the channel from “bioc23” to “bioc2023”

2022-10-23

Charlotte Soneson (03:45:21): > @Charlotte Soneson has joined the channel

2022-12-12

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2022-12-20

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Michael Love (14:02:41): > anyone know where i can get a good lobster roll?

Ludwig Geistlinger (14:06:13): > yankee lobster, seaport

irem Kahveci (14:09:46): > @irem Kahveci has joined the channel

Nicole Ortogero (14:27:31): > @Nicole Ortogero has joined the channel

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Erica Feick (15:33:10) (in thread): > we’ll get you set up when you’re here:grinning:

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Stephanie Hicks (19:34:21) (in thread): > lobstAH

ChiaSin (19:56:16): > @ChiaSin has joined the channel

Michael Love (20:33:59) (in thread): > haha just trying to jump start the channel

Michael Love (20:34:32) (in thread): > Stephanie, I’ll practice my accent before i head back by watching Ben Affleck movies

Stephanie Hicks (22:21:52) (in thread): > i feel like it should be the entry fee into the city. “before you entry the grounds of downtown Boston, you must watch at least three ben affleck movies”:upside_down_face:

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2022-12-21

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2022-12-22

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2022-12-23

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2022-12-25

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2022-12-28

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2023-01-07

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2023-01-08

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2023-01-10

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2023-01-12

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2023-01-13

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2023-01-14

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2023-01-18

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2023-01-20

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2023-01-25

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2023-01-26

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2023-01-27

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2023-01-28

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2023-01-31

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2023-02-03

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2023-02-05

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2023-02-06

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2023-02-07

Maria Doyle (15:38:43): > :mega:Abstract submission is now open for the BioC2023 conference in Boston August 2-4bioc2023.bioconductor.orgSubmit an abstractby March 19for > * Short talk > * Workshop > * Package demo > * Birds-of-a-feather session > * Poster > :point_right:Submit herehttps://openreview.net/group?id=bioconductor.org/BioC/2023/Conference

2023-02-08

Assa (03:34:44): > Can you please tell me, if the bioc2023 will be offered as a hybrid conference this year like the last event, or only as a on-site conference in Boston?

Maria Doyle (06:37:55) (in thread): > Hi Assa, the plan is for hybrid, we’ll add that to the BioC2023 website. There’s an option in the abstract submission form to select if you’d prefer to present virtually or in-person.

Janani Ravi (09:08:04) (in thread): > Maria, can talks/posters be presented virtually too or is only attendance hybrid?Thanks!

Maria Doyle (09:40:31) (in thread): > Talks and posters can be presented virtually too

2023-02-10

Leonardo Collado Torres (15:13:48): > @Leonardo Collado Torres has joined the channel

Leonardo Collado Torres (15:15:06): > Hi@Erica Feick. Can BioC give support letters to request US tourist visas (B1/B2)? A student from LCG-UNAM (in Mexico:flag-mx:) that works with me (https://daianna21.github.io/) doesn’t have a tourist visa yet and would need one in order to attend the conference.

Leonardo Collado Torres (15:15:20): > Otherwise I can write her a letter myself

Renee Garcia Flores (15:22:48): > @Renee Garcia Flores has joined the channel

Vince Carey (19:56:38) (in thread): > Hi@Leonardo Collado TorresI can write but I have never done this before. If you or the student can give guidance/draft I will put it on Harvard letterhead.

2023-02-13

stefano mangiola (22:16:19): > @stefano mangiola has joined the channel

2023-02-22

mahamtariq58 (08:28:21): > @mahamtariq58 has joined the channel

2023-02-28

Krithika Bhuvanesh (16:53:14): > @Krithika Bhuvanesh has joined the channel

2023-03-01

Vince Carey (02:29:49): > bioconductor.orgsays conference is april 2-4 … needs fix!

Vince Carey (02:30:26) (in thread): > Checking in here… anything needed on our end?

Lori Shepherd (07:23:59): > yiks! on it

Lori Shepherd (09:57:26): > fixed

2023-03-06

Andres Wokaty (12:07:45): > Will there be lightening talks for the conference?

Vince Carey (16:51:46): > I hope so

2023-03-07

Tim Triche (19:21:41): > Apparently I am President for Life of running those things after last year? Happy to be fascist in chief

Andres Wokaty (21:14:09) (in thread): > Well, you did do a great job.:slightly_smiling_face:

2023-03-08

Levi Waldron (07:41:14): > @Lori Shepherdwould you be up for recording a new Introduction for the BiocAsia keynote you gave last year? We could re-use the rest of the video pasted to your new introduction, as one of the pre-conference orientation videos for virtual participants. You could of course re-record other parts or the whole thing if you prefer, but the rest still seems quite appropriate…

Levi Waldron (07:41:24): > https://www.youtube.com/watch?v=NMv27jgHRb4 - Attachment (YouTube): What is Bioconductor?

Lori Shepherd (08:19:34): > yes I can do that

Levi Waldron (09:15:32) (in thread): > Great, Lori!

Lori Shepherd (09:16:22) (in thread): > I’m pretty tied up the next few days – I could probably work on it next week. Just the intro to something more generic than welcome to biocasia?

Levi Waldron (09:17:21) (in thread): > There’s no rush at all - I was thinking a sort of “hello BioC2023” ? While you’re at it you could also record a generic intro so we can mix it into a couple versions.

Lori Shepherd (09:17:43) (in thread): > Sure thing

Levi Waldron (09:18:12) (in thread): > (It will probably be a couple months before we put it in the conference platform)

2023-03-09

Andres Wokaty (14:44:09): > Are there some talks for the conference that get reserved a spot at the conference outside of abstract review process? Or do all talks need to go through the review? The cloud working group is planning to submit an abstract, but I was curious if we could reserve a spot at the conference.

2023-03-10

Vince Carey (11:07:33): > Conference “after hours” events may be possible to get people together if the daily schedule is too full. We should think of some venues for this kind of gathering.

Ryan C. Thompson (13:58:02): > Hi, I’m considering submitting an abstract for a software demo, but the software I would be presenting on is still in development and will probably not be ready to release by the time of the conference. Is it still ok to submit an abstract if I might not be able to share the code at the time of the conference? (We do intend to release the software when it’s ready, potentially using an “academic free, industry paid” model.)

2023-03-13

John Hutchinson (09:37:52): > @John Hutchinson has joined the channel

2023-03-15

Erica Feick (09:21:03): > Registration for BioC2023 is now open! Early registration rates apply.:tada:https://hopin.com/events/bioc2023 - Attachment (hopin.com): BioC 2023 Annual Conference - Aug 02 | Hopin > Get tickets to BioC 2023 Annual Conference, taking place 08/02/2023 to 08/04/2023. Hopin is your source for engaging events and experiences.

Leonardo Collado Torres (12:48:58) (in thread): > so both@Daianna Gonzalez-Padillaand@Renee Garcia Floreshave started their B1/B2 visa applications and from what they tell me, the system didn’t allow for letters when you apply

Daianna Gonzalez-Padilla (12:49:28): > @Daianna Gonzalez-Padilla has joined the channel

Leonardo Collado Torres (12:49:54) (in thread): > they might need them whenever they actually go to the US consulate, but first, we are trying to see which part of Mexico they might get an earlier appointment than others. If it’s after BioC2023, then well, the letter won’t even matter then

Leonardo Collado Torres (12:50:05) (in thread): > we’ll keep you posted@Vince Carey

Nick Eagles (12:59:55): > @Nick Eagles has joined the channel

2023-03-16

Francesc Català-Moll (03:06:34): > @Francesc Català-Moll has joined the channel

2023-03-17

Hedia Tnani (10:58:09): > @Hedia Tnani has joined the channel

Hedia Tnani (10:58:19): > Hi !

Hedia Tnani (10:58:58): > I’m getting this error today

Hedia Tnani (10:59:05): > ****Error:****The OpenReview API is currently unavailable, please wait and try again later

Hedia Tnani (10:59:32): > When trying to sign up for OpenReview

Hedia Tnani (10:59:54): > and create a new user to login

Charlotte Soneson (11:30:31): > Hi@Hedia Tnani- I wrote to OpenReview to ask about this, and they say that the issue should be solved now. Could you try again and let us know if it works?

Hedia Tnani (11:43:03): > Thanks a lot@Charlotte Soneson. It works now:slightly_smiling_face:.

Charlotte Soneson (11:43:47): > :+1:

Jiefei Wang (15:28:28): > @Jiefei Wang has joined the channel

2023-03-20

Joselyn Chávez (13:25:11) (in thread): > Hi@Erica Feick, when is the last day for early registration fees?I’mjust trying to figure out if I can wait a few days or if I should purchase the ticket right now. Thanks in advance:relaxed:

Erica Feick (13:25:40) (in thread): > Early registration ends may 31 - you have time!

Joselyn Chávez (13:25:54) (in thread): > Awesome!Thank you!!

Lambda Moses (13:44:06): > I missed the deadline to submit abstract just a little:sob:. Can you recommend another conference to submit the abstract to? It’s about spatial transcriptomics.

Erica Feick (16:32:57): > Abstract submission for BioC2023 will re-open for the next 24 hours. If you missed it, please submit your abstracts athttps://openreview.net/group?id=bioconductor.org/BioC/2023/Conference - Attachment (OpenReview): BioC 2023 Conference > Welcome to the OpenReview homepage for BioC 2023 Conference

Lambda Moses (16:45:21): > Thank you so much! I just submitted.

2023-03-21

Augustine (11:55:56): > @Augustine has joined the channel

Hyacinthe TUYUBAHE (12:01:07): > @Hyacinthe TUYUBAHE has joined the channel

2023-03-22

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2023-03-24

Mikhail Dozmorov (06:45:15): > Call for volunteers - if you would like to help with the website development for BioC2023 and future conferences, seehttps://github.com/Bioconductor/BioC2023/issues/9.@Andres Wokaty,@Samuel Gamboa,@Marouen Ben Guebila,@Afrooz Razi,@Rui Fu,@Keerthana,@Junxia Lin - Attachment: #9 BioC conference website development > Ideas for improving the https://bioc2023.bioconductor.org/ website. > > ☐ Automate schedule creation. The procedure and code described in the https://github.com/Bioconductor/BioC2023#adding-items-to-the-schedule-table|README need to be tested, better documented. > ☐ Make the default font larger/adjustable. Currently, the font size in individual sections can be adjusted, but not site-wide. > ☐ Populate “Mark your calendar” section from yaml files. Currently, hard-coded in layouts/partials/news.html. > ☐ Add built-in registration form. This was done for EuroBioC2022 but needs to be tested and documented. > ☐ Consider new templates for future BioC conferences. gdg-x/zeppelin - original conference template, GDG DevFest - demo web site. bcc2020/bcc2020.github.io - modified conference template for the BCC2020 conference. Besides the look and functionality, detailed documentation is important. > > If you would like to help, please, add your GitHub user ID, the task, and the timeline. Create pull requests, or separate demo repos. Add more ideas.

2023-03-29

Marouen Ben Guebila (12:56:03): > @Marouen Ben Guebila has joined the channel

2023-04-04

Jacques SERIZAY (05:02:53): > @Jacques SERIZAY has joined the channel

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2023-04-12

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2023-04-18

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2023-04-24

Jiefei Wang (14:30:18): > Hi all, I’m not sure if this is the right place to ask, but does anyone know what costs travel assistance cover? I’m a speaker in Bioc2023 and I want to plan ahead for my talk. Also, when should we expect the application result? Thanks.

Vince Carey (16:10:20): > @Jiefei Wangglad to hear you are coming. For all readers: the travel assistance opportunity should be used as a last resort – if you have grant money or faculty resources to tap in to for travel, please use these so that we can maximize support to unfunded students and scholars. Thanks

Jiefei Wang (17:38:18): > Thanks for the information. Yes I’d like to come, but I do not have any funding support from our department, that is the reason I need to apply for the assistance

2023-05-04

Maria Doyle (10:23:52): > We would appreciate your support in spreading the word about the BioC2023 pre-conference Carpentries RNA-seq workshop. Please consider sharing the following text and posts with your networks to help us reach a wider audience. Thank you for your help in making this workshop a success! > ———- > Are you ready to dive into the world of RNA-seq data analysis and elevate your research to new heights? Join ourBioC2023 pre-conference workshopin Boston, Jul 31-Aug 1, on RNA-seq analysis with Bioconductor and master the essential tools and techniques to make sense of your gene expression data! > > In this hands-on workshop, you will: > * Learn from leading experts in the field of bioinformatics and genomics > * Acquire a solid understanding of the RNA-seq analysis pipeline using Bioconductor’s state-of-the-art tools > * Gain insights into best practices for processing and analyzing RNA-seq data > * Explore a variety of methods for identifying differentially expressed genes, pathway analysis, and functional enrichment > * Develop the skills to interpret and visualize your results effectively > * Engage in interactive sessions and group discussions to address your specific questions and challenges > * Network with fellow researchers, bioinformaticians, and industry professionals > Whether you’re a graduate student, a bioinformatics analyst, or a researcher looking to expand your expertise in RNA-seq data analysis, this workshop is designed for you. Prior experience with R programming is required, but all levels of RNA-seq expertise are welcome. > > Don’t miss this fantastic opportunity to enhance your skills and stay at the forefront of cutting-edge genomics research. Spaces are limited, soapply before May 31 to secure your spotand unlock the full potential of your RNA-seq data with Bioconductor! > ———- > Twitterhttps://twitter.com/Bioconductor/status/1654097829420302337Mastodonhttps://genomic.social/@bioconductor/110310382788316790

Leopoldo Valiente (16:26:20): > @Leopoldo Valiente has joined the channel

Krithika Bhuvanesh (19:10:24) (in thread): > Done ! I am getting some good momentum on linkedin. Also posted in the R linkedin group; and in R-Ladies slack

Krithika Bhuvanesh (19:10:50) (in thread): > I can tag you guys so it can be reposted on your profiles. That will help as well

Krithika Bhuvanesh (19:17:19) (in thread): > I’m unable to tag@Maria Doyleand@Charlotte Sonesonsince you both are not in my network (yet). Was able to tag Mikhail, Erica, Aedin, and Levi.

Krithika Bhuvanesh (19:17:48) (in thread): > Cannot find@Jenny Drnevichon linkedin.

Krithika Bhuvanesh (19:20:24) (in thread): > Cannot tag@Tim Tricheyet since you are not in my network.

Tim Triche (19:20:49) (in thread): > Oh! OkI’llfix this!

2023-05-05

Maria Doyle (04:56:27) (in thread): > Great! Thanks Krithika:pray:

Jenny Drnevich (10:04:39) (in thread): > That would be because I am not on LinkedIn!

Jenny Drnevich (10:05:16) (in thread): > Nor on social media really. Sorry for being a Luddite…

Krithika Bhuvanesh (12:56:34) (in thread): > No worries@Jenny Drnevich. I’m a hybrid, only on linkedin and not twitter anymore

2023-05-18

Oluwafemi Oyedele (05:53:56): > @Oluwafemi Oyedele has joined the channel

2023-05-25

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2023-06-01

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2023-06-09

Aedin Culhane (17:24:56): > @Aedin Culhane has joined the channel

2023-06-11

Selvi G (11:46:35): > @Selvi G has joined the channel

2023-06-19

Pierre-Paul Axisa (05:09:05): > @Pierre-Paul Axisa has joined the channel

2023-06-29

Davide Risso (11:25:50): > @Davide Risso has joined the channel

Davide Risso (11:26:10): > Am I the first one?https://twitter.com/drisso1893/status/1674438275824599044?s=46&t=dLb5okm7fr15BtVm3q7rGQ - Attachment (Twitter): Davide Risso on Twitter > Prepared this for #CSAMA2023 to introduce HDF5 and DelayedArray, might as well monetize! #bioc2023 #biocmeme @bioconductor

Maria Doyle (11:40:49): > Yes!:first_place_medal::smile:Nice!

Krithika Bhuvanesh (13:19:23): > Here is my attempt. I don’t use mastodon or twitter . So directly posting here. Hope that is okay:smile:. All characters are fictitious - any resemblance is purely coincidental. (Reference: The godfather movie)#bioc2023#biocmeme - File (PNG): plot_zoom_png.png

Maria Doyle (15:48:45): > If you’re wondering what above is about:slightly_smiling_face:https://genomic.social/@bioconductor/110628079971454522 - Attachment (genomic.social): Bioconductor (@bioconductor@genomic.social) > Attached: 1 image > > :mega: Join the Bioconductor Meme Contest :trophy: Show us your creativity! > > To enter: > :one: Create a Bioconductor meme > :two: Share it on Twitter/Mastodon > :three: Tag @bioconductor, add #bioc2023 #biocmeme > :four: Drop the URL in our #bioc2023 Slack channel: slack.bioconductor.org > > Tips and prize info :point_down:

2023-07-05

irem Kahveci (06:40:24): > https://twitter.com/kahvec_irem/status/1676539199674101763?s=20 - Attachment (Twitter): İrem Kahveci on Twitter > -I write Bioconductor code that works flawlessly for days > +I forget to save the codes when shutting down the computer. > > #bioc2023 #biocmeme

2023-07-11

Anna Powell (07:11:03): > @Anna Powell has joined the channel

Cindy Fang (13:03:34): > @Cindy Fang has joined the channel

2023-07-12

Guillaume Devailly (02:51:25): > @Guillaume Devailly has joined the channel

Guillaume Devailly (02:52:31): > A couple of entries:grin::https://mamot.fr/@G_Devailly/110696489967144211https://mamot.fr/@G_Devailly/110696446626161731 - Attachment (La Quadrature du Net - Mastodon - Media Fédéré): Guillaume Devailly (@G_Devailly@mamot.fr) > Attached: 1 image > > #bioc2023 #biocmeme > > @bioconductor@genomic.social package testing. - Attachment (La Quadrature du Net - Mastodon - Media Fédéré): Guillaume Devailly (@G_Devailly@mamot.fr) > Attached: 1 image > > #bioc2023 #biocmeme > > Steps to submit a @bioconductor@genomic.social package:

Federico Marini (04:39:09): > hope it is not too late to join the party:slightly_smiling_face:https://twitter.com/FedeBioinfo/status/1679047109360664576?s=20https://twitter.com/FedeBioinfo/status/1679047506120851456?s=20 - Attachment (Twitter): Federico Marini - @federicomarini@genomic.social on Twitter > Had this in a presentation some years ago (EuroBioc in Munich?) as an ode to interoperability :grimacing: #bioc2023 #biocmeme - Attachment (Twitter): Federico Marini - @federicomarini@genomic.social on Twitter > … and two quick shameless plugs for our iSEE package #bioc2023 #biocmeme

Michael Love (05:18:11): > https://twitter.com/mikelove/status/1679057484605005824 - Attachment (Twitter): Michael Love on Twitter > How to object @bioconductor @steman_research #bioc2023 #biocmeme

Nadine Bestard-Cuche (10:39:15): > @Nadine Bestard-Cuche has joined the channel

2023-07-13

Martin Grigorov (02:20:11): > @Martin Grigorov has left the channel

2023-07-18

Ismael Rodriguez (09:02:29): > @Ismael Rodriguez has joined the channel

2023-07-19

Augustine (11:21:23): > Hey guys, Can you point me to where I can find the template for previous lightning talks.

2023-07-20

Aedin Culhane (05:43:17): > Lightning talk normally follow the 3-3-5 rule.3 slides, 3 mins presentation, 2 mins q&a.Poster talks are shorter.

Augustine (14:13:00): > Thanks@Aedin Culhane

2023-07-27

Louise Morlot (07:34:27): > @Louise Morlot has joined the channel

2023-07-28

claudiozanettini (10:38:43): > @claudiozanettini has joined the channel

Daniel Adediran (10:55:19): > @Daniel Adediran has joined the channel

Gurpreet Kaur (11:19:15): > @Gurpreet Kaur has joined the channel

Paul Kwong Yu (11:32:52): > @Paul Kwong Yu has joined the channel

Kinnary Shah (12:24:36): > @Kinnary Shah has joined the channel

Michael Steinbaugh (12:58:34): > @Michael Steinbaugh has joined the channel

Michael Steinbaugh (12:58:51): > is registration for bioc2023 virtual maxed out?

Andres Wokaty (13:08:01) (in thread): > It’s still open on the website. Are you getting an error when you try to register?

Michael Steinbaugh (13:09:29) (in thread): > correct yeah i’m seeing “Registration limit has been met for this event”

Andres Wokaty (13:13:45) (in thread): > @Erica FeickThe website says registration is still open but Michael got a registration limit met notice when you increment any of the virtual tickets.

Michael Steinbaugh (13:15:37) (in thread): > thanks jennifer and erica!

Erica Feick (13:20:34) (in thread): > Michael what are you trying to register as? I can adjust the numbers on the back end.

Michael Steinbaugh (13:26:10) (in thread): > virtual industry – 2 tix

Konstantinos Daniilidis (13:47:07): > @Konstantinos Daniilidis has joined the channel

Axel Klenk (13:57:57): > @Axel Klenk has joined the channel

Ingo (15:01:48): > @Ingo has joined the channel

Greg Stacey (15:06:26): > @Greg Stacey has joined the channel

Benjamin Yang (15:56:42): > @Benjamin Yang has joined the channel

2023-07-29

Pranavathiyani G (00:41:42): > @Pranavathiyani G has joined the channel

Erica Feick (08:26:39) (in thread): > Michael this should be all set now. Please try again.

2023-07-30

Shila Ghazanfar (20:10:20): > @Shila Ghazanfar has joined the channel

2023-07-31

Michael Steinbaugh (08:38:51) (in thread): > thanks@Erica Feicklooks good on the website, we’ll try signing up again today

2023-08-01

Andrés Arredondo Cruz (00:37:24): > @Andrés Arredondo Cruz has joined the channel

Esther Camacho (02:14:15): > @Esther Camacho has joined the channel

Esther Camacho (02:23:06): > Hi! I would like to know if there is going to be a certificate of attendance when the conference finishes and how to obtain this. My institution asks for it. Thank you in advance!

Madan Mohan (02:31:01): > @Madan Mohan has joined the channel

Marcel Ramos Pérez (08:23:03) (in thread): > Hi Esther! Yes, you will need to complete the post conference survey to request one

Esther Camacho (08:23:34) (in thread): > Thank you Marcel!

Paula Beati (08:31:06): > @Paula Beati has joined the channel

Jill Lundell (12:28:33): > @Jill Lundell has joined the channel

Nikhil Mane (14:21:51): > @Nikhil Mane has joined the channel

Jiefei Wang (17:59:40): > I think the bioc2023 schedule page is broken now. It directs me to the hopin platform but I cannot find our schedule there. Maybe it exists somewhere in hopin but it should not be that hard to find.

Marcel Ramos Pérez (18:21:40) (in thread): > You should use the link that you received via email to direct you to the hopin website / schedule.

Jiefei Wang (18:27:47) (in thread): > Hi Marcel, it is nice to hear from you. How are you doing? Regarding the link, shouldn’t we puthttps://hopin.com/events/bioc2023in our official website as well? Right now it ishttps://hopin.com/

Marcel Ramos Pérez (18:33:20) (in thread): > Yes it should probably point to the Bioc link

Samuel Gamboa (18:42:47) (in thread): > Thanks for pointing that out. I just changed it.

Brian Schilder (18:44:03): > @Brian Schilder has joined the channel

Michael Lynch (22:15:08): > @Michael Lynch has joined the channel

Sarah Parker (23:37:09): > @Sarah Parker has joined the channel

Givanna Putri (23:51:57): > @Givanna Putri has joined the channel

Givanna Putri (23:55:33): > Hi guys, just wondering whether the talks will be recorded and subsequently uploaded on youtube? Unfortunately being in Australia, all the talks will be live at crack of dawn between 12am and 7am, which makes it extremely difficult for us to catch them live.

2023-08-02

Harkirat Sohi (01:01:10): > @Harkirat Sohi has joined the channel

Harkirat Sohi (01:03:15) (in thread): > I have the same question.

Peter Hickey (01:32:23) (in thread): > previous years they have been uploaded (although sometimes a few days later), so hopefully the same will happen this year.

Qi (06:53:15): > @Qi has joined the channel

Micheal O Dalaigh (07:56:58): > @Micheal O Dalaigh has joined the channel

Kaelyn Long (08:11:44): > @Kaelyn Long has joined the channel

Levi Waldron (08:33:19): > I’m not getting any sound online…

jmsimon (08:35:56): > @jmsimon has joined the channel

Ludwig Geistlinger (08:36:51): > Same here

kent riemondy (08:42:40): > @kent riemondy has joined the channel

Alex Mahmoud (08:48:18): > Links for website redesign presented by Maria Doyle during Welcome talk > Preview:https://bit.ly/bioc-website-previewFeedback:https://bit.ly/bioc-website-feedback2

Leonardo Collado Torres (08:49:44): > Thanks Alex!

Tim Triche (08:53:34): > @Alex Mahmoudaudio is not working on our end

Alex Mahmoud (08:54:06): > Here is the Workshop Intro video:https://www.youtube.com/watch?v=uv1vGXLY0Mgforworkshop.bioconductor.org

Andres Wokaty (09:01:19): > I’m going to try to take conference notes summarizing the contents of talks athttps://docs.google.com/document/d/1VlVIrGGca7Uz-0BSoGsUirZhsZocvMzBrLuvM9bON8s/edit?usp=sharingif anyone would like to help.

Andres Wokaty (09:16:04) (in thread): > Thanks to anyone helping!!

Michael Love (09:55:15): > Regarding replacing Illustrator multi-panel figure placement with an R solution, check out the Bioc packageplotgardenerhttps://phanstiellab.github.io/plotgardener/articles/guides/our_philosophy.htmlhttps://twitter.com/i/status/1436417383732813829 - Attachment (phanstiellab.github.io): Our Philosophy > plotgardener - Attachment (Twitter): doug phanstiel on Twitter > I am excited to announce our preprint “Plotgardener: Cultivating precise multi-panel figures in R”. Plotgardener is an R package that allows exact sizing and placement of genomic plots using an absolute, coordinate-based plotting system. https://t.co/EAPDALCS2H

Maria Doyle (10:28:04) (in thread): > Link to slides:https://docs.google.com/presentation/d/1E2InDxMRVOTVqYvWT6hBt0ki44mLUru1-yAnzyxw2jk/edit?usp=sharing

Jamin Liu (11:18:37): > @Jamin Liu has joined the channel

Jenny Drnevich (11:21:14) (in thread): > They should be available on Hopin a couple of hours after each talk. See the Replay tab on the left

Jenny Drnevich (11:21:39) (in thread): > And eventually (at least days) on YouTube

Megha Lal (12:01:51): > @Megha Lal has joined the channel

Jennifer Foltz (16:25:25): > @Jennifer Foltz has joined the channel

Erica Feick (16:51:33): > Most the recordings from today are now on the Hopin platform. You can find them under the Replay tab.

Michael Love (17:13:03): > Note that Thursday’s keynote will begin at8:30 AM - File (PNG): Screenshot 2023-08-02 at 5.12.58 PM.png

Nitesh Turaga (23:27:19): > @Nitesh Turaga has joined the channel

2023-08-03

Erica Feick (09:50:15): > Don’t forget to submit an abstract for a lightning talk, deadline is 8/4 10am Eastern Time. This is open to virtual and in-person attendees. Slots assigned on a first-come first-served basis.forms.gle/rHma96N7Q9E2NJYb7

Sara Stankiewicz (09:56:46): > @Sara Stankiewicz has joined the channel

Erica Feick (10:25:05): > Please take a moment to complete this poll for the Bioconductor community.https://forms.gle/JJG2yUgvQycaHMss8 - Attachment (Google Docs): Bioc2023 Poll > This form is anonymous and is not collecting data on respondents.

Joost Groot (10:58:07): > @Joost Groot has joined the channel

Abiud Cantu (10:59:00): > @Abiud Cantu has joined the channel

Flávia E. Rius (11:16:28): > @Flávia E. Rius has joined the channel

Tim Triche (11:55:13) (in thread): > Rubber chickens will be provided to the “winning” talks

David Rach (12:22:36) (in thread): > Hi@Erica Feick, where do we find the replay tab? A couple of us in-person attendees have looked but couldn’t find it on the mobile app. Thanks! > > Edit: Found them on the web version!

Erica Feick (13:23:08) (in thread): > yes we are discovering that the mobile app is lacking some features! Will be brought to Hopin’s attention!

Ritika Giri (15:56:35): > @Ritika Giri has joined the channel

Matt Montierth (16:04:36): > @Matt Montierth has joined the channel

Sarah Parker (21:14:18) (in thread): > Is there a particular format for the slides to upload?

2023-08-04

tho nguyen (00:08:01): > @tho nguyen has joined the channel

Erica Feick (08:22:38) (in thread): > either google slides or powerpoint.

Erica Feick (08:23:02): > Don’t forget to submit an abstract for a lightning talk, deadline is today @ 10am Eastern Time. This is open to virtual and in-person attendees. Slots assigned on a first-come first-served basis.forms.gle/rHma96N7Q9E2NJYb7

Michael Love (08:26:59) (in thread): > can i request in the 3-4pm slot (i’m chairing at 4pm)

Erica Feick (08:28:19) (in thread): > yes

Vince Carey (09:58:32): > Here’s the description of jetstream2, on which the workshop platform runs. - File (PDF): jetstream2.pdf

Vince Carey (09:58:53): > @Sean Maden^^

Sean Maden (09:58:58): > @Sean Maden has joined the channel

Nick Owen (10:05:08): > @Nick Owen has joined the channel

Scott Norton (10:51:24): > @Scott Norton has joined the channel

Frank Rühle (10:52:15): > @Frank Rühle has joined the channel

Maria Doyle (12:56:41): > BioC2023 meme competition voting form! > Vote by 5pm ET today

Dror Perk (13:04:22): > @Dror Perk has joined the channel

Jennifer Foltz (13:05:07): > Hi! I’m sorry if this has already been asked- this is my first Bioc2023 conference. How long will the workshop materials be available to access?

Trisha Timpug (13:05:26): > @Trisha Timpug has joined the channel

Jenny Drnevich (13:05:47) (in thread): > Indefinitely, I believe.@Alex Mahmoud?

Ahmad Al Ajami (13:09:49): > Also, where to find the recordings please?:face_with_monocle:

Ritika Giri (13:11:18): > For now in the “Replay” tab on the sidebar - but assuming they might be up on Youtube at some point?

Alex Mahmoud (13:11:46) (in thread): > Yes, they will be available under the “Archived” section indefinitely after the conference. We might start removing old material but it likely won’t be in the next year or so

Jennifer Foltz (13:14:21) (in thread): > great, thank you!

Lori Shepherd (13:21:09): > They will eventually be on YouTube, yes

Lori Shepherd (13:33:49) (in thread): > There still are a few spots available… If anyone missed the 10 am deadline no worries… You can still submit.

Renee Garcia Flores (13:41:32): - File (JPEG): IMG_8950

Wes W (16:32:49): > @Wes W has joined the channel

Wes W (16:33:35): > for those wanting the link to the scMonster sticker –>https://store.tumortalkshow.com/listing/scmonster-sticker

Maria Doyle (17:08:59) (in thread): > Congrats@irem Kahveci!!!:tada:your meme was voted as the winner from 90 votes

Maria Doyle (17:09:32): > Irem’s memehttps://twitter.com/kahvec_irem/status/1676539199674101763?s=20 - Attachment (Twitter): İrem Kahveci on Twitter > -I write Bioconductor code that works flawlessly for days > +I forget to save the codes when shutting down the computer. > > #bioc2023 #biocmeme

Erica Feick (17:12:29): > Thank you for attending BioC2023! Please take a moment to help us plan future meetings by taking the post-conference survey.forms.gle/wk9mxJasKPUcFLtM7

Trisha Timpug (17:50:53): > Hi fellow attendees, a few of us are at Time Out Market if anyone wants to join! :) feel free to swing by!

Lambda Moses (20:36:08) (in thread): > The new website looks great! I took the survey and realized that I couldn’t go back to a previous part of it. There’s one thing I forgot to say: I think the tab “For Data Scientists” might be a bit confusing, because when I think of data scientists, I think of expert coders and package developers are data scientists as well, so my undergrad sophomore self might say, “Well, I’m not a data scientist; I just began to learn R. This site feels kind of intimidating.” “For Users” is more straightforward. Although package developers are users because we typically built upon existing packages, I don’t expect users to be expert coders. I don’t think “users” is condescending and I have no problem describing myself as a user even though I’m also a developer, unlike how some people don’t like the word “trainee”.

2023-08-05

Maria Doyle (09:47:03) (in thread): > Thanks for the feedback Lambda!

2023-08-08

Erica Feick (10:18:01): > It’s not too late to let us know what you think! Help us plan 2024 with your thoughts on BioC2023

Kayla Interdonato (10:56:48) (in thread): > Clicking on the link for a sticker leads to BioC2021 and the 20th Anniversary Stickers form. I just want to be sure filling out the form will result in a BioC2023 sticker. Thanks!

Erica Feick (14:10:41) (in thread): > I had fixed that on Friday. Could you refresh the page and try again?

Kayla Interdonato (14:13:23) (in thread): > The link in the heading of the form goes to the BioC2023 sticker form. I clicked on the link at the end of the conference form so I won’t be able to test if that link works without filling out a second conference form.

Erica Feick (14:55:38) (in thread): > oh, okay I fixed the one at the top but not the one at the end!

Andrew McDavid (20:44:25): > @Andrew McDavid has joined the channel

2023-08-25

Federica Gazzelloni (11:46:02): > :earth_africa:JoinR-Ladies Romeon Monday, August 28, 2023, 4:00PM CET / 10:00 AM EDT at the Department of Statistics of Sapienza University in Rome!:star-struck::pushpin:RSVP:https://www.meetup.com/rladies-rome/events/295173070/We’ll be watching selected talks from the Bioconductor Conference 2023. Don’t miss this opportunity to meet the R-Ladies Rome team in person! If you can make it in person, it will be a shorter session online too. > See you there!:wave: - Attachment (rladiesrome.quarto.pub): R-Ladies Rome > Learning Network: A collaborative network for knowledge sharing and skill-building - Attachment (Meetup): R/Bioconductor watch party for #BioC2023 , Mon, Aug 28, 2023, 4:00 PM | Meetup > :loudspeaker: Join Us In Person in Rome! > > :loudspeaker: Join Us Online streaming (a zoom link will be provided to all registered attendees) > > :busts_in_silhouette: We’re thrilled to announce our upcomin

2023-09-06

Erica Feick (10:48:27): > :tada:The videos from BioC2023 are now live on theBioconductor YouTube channel. - Attachment (YouTube): BioC2023 > Bioconductor conference, August 2-4, 2023, Dana-Farber Cancer Institute, Boston, MA.

2023-09-07

Krithika Bhuvanesh (14:37:30): > Hi@Erica Feick- I got your meeting invite for Bioc 2024 planning . That is great ! I noticed the meeting time has changed to Tuesday noon. Previously these meetings were Tuesdays at 11 am

Krithika Bhuvanesh (14:37:44): > Is the time going to be at noon going forward ?

2023-09-12

Ilaria Billato (10:25:10): > @Ilaria Billato has joined the channel

2023-09-14

Levi Waldron (03:32:16) (in thread): > How was the watch party?

2023-09-15

Federica Gazzelloni (10:16:19) (in thread): > Thanks for asking. All good, had to select the talks, they were all interesting.

2023-09-19

Levi Waldron (09:25:33) (in thread): > Happy to hear it, it was a first as far as I know!

2023-09-20

Jaykishan (05:29:03): > @Jaykishan has joined the channel

2023-09-21

Philippine Louail (16:40:33): > @Philippine Louail has joined the channel

2023-11-18

Michael Love (09:21:00): > @Michael Love has left the channel

2023-12-28

David Rach (08:58:34): > @David Rach has left the channel

2024-02-09

Maria Doyle (07:22:53): > :mega:Save the date for BioC 2024 in Grand Rapids Michigan, USA, July 24-26 - File (PNG): BioC2024 Save the Date.png

2024-02-19

Maria Doyle (11:38:07): > :mega:Abstract submission is open for #BioC2024 conference in Michigan:us:July 24-26http://www.bioc2024.bioconductor.org/! > > Submit your abstractby March 25 for: > * Short talk > * Package demo > * Birds of a feather > Scholarship applications are also open for those for whom cost is a barrier. This is a great chance to engage with the community and showcase your work!:point_right:Submit your abstract here:https://cfp.bioconductor.org/2024/cfp - File (PNG): BioC2024 Call For Abstracts.png

2024-03-05

Vamika Mendiratta (02:09:07): > @Vamika Mendiratta has joined the channel

Semango Nicholas (15:27:24): > @Semango Nicholas has joined the channel

2024-03-17

Raihanat Adewuyi (20:42:52): > @Raihanat Adewuyi has joined the channel

2024-03-22

Maria Doyle (11:50:08): > :loudspeaker:Good News!:rotating_light:We’ve extended the deadline! The BioC2024 call for abstracts and sticker contest entries now has a new submission deadline ofApril 1st. Don’t miss this extra time to get your abstracts and entries in! Check out all the details athttps://www.bioc2024.bioconductor.org/ - File (PNG): BioC2024 Call For Abstracts (1).png

Erica Feick (15:42:31): > To get all the updates on BioC2024, please join the new#bioc2024channel!

2024-03-25

Sehyun Oh (12:20:55): > @Sehyun Oh has left the channel

2024-03-26

Eve Gardner (13:02:32): > @Eve Gardner has joined the channel

Erica Feick (14:57:41): > has renamed the channel from “bioc2023” to “bioc-conference-everyone”

Erica Feick (14:57:51): > Hi everyone,

Erica Feick (14:58:51): > We’ve changed the name of this channel to be a continuous channel for the the North American conference, so you don’t need to join a new channel each year! Stay on this channel to find out all the details of the upcoming BioC2024 in July!

Hervé Pagès (17:18:14): > @Hervé Pagès has joined the channel

2024-03-27

Nitya Singhal (15:38:16): > @Nitya Singhal has joined the channel

Leenaa Al-Amin (17:37:21): > @Leenaa Al-Amin has joined the channel

2024-04-01

Lambda Moses (18:36:55): > I submitted my abstract last minute. I found that there’s no option for workshops. Are you not doing the longer workshops anymore, like people don’t like them?

Lori Shepherd (20:05:49): > Mixed opinions in past feedback.
> Peoplewould comment thatmany times the longer workshops didn’t end up being workshops and participants couldn’t follow along; they ended up more like long extended package demos. > Others were engaging and participants enjoyed a lot

Lambda Moses (20:12:21): > So will there still be workshops in Bioc2024?

Tim Triche (23:13:24): > Handful of invited and space for BoF/freeform affairs.Kind of a transitional state—there will be time and space for package demos to “stretch out” for sure if attendees and presenters want to

2024-04-04

Tung Trinh (23:38:35): > @Tung Trinh has joined the channel

2024-04-09

Amal Boukteb (11:05:20): > @Amal Boukteb has joined the channel

2024-04-13

Ankitha Ramaiyer (20:48:34): > @Ankitha Ramaiyer has joined the channel

2024-04-18

Philipp Sergeev (03:01:42): > @Philipp Sergeev has joined the channel

2024-04-22

Farhan Ameen (20:24:03): > @Farhan Ameen has joined the channel

2024-05-19

David Rach (12:53:58): > @David Rach has joined the channel

2024-06-03

Andrew Ghazi (14:18:45): > @Andrew Ghazi has joined the channel

Tram Nguyen (14:52:38): > @Tram Nguyen has joined the channel

2024-06-06

Ludwig Geistlinger (12:52:37): > I have one question re: lightning talks for Bioc2024 - is the sign-up process the same as the last years, ie will be announced at the conference itself?

Jenny Drnevich (12:59:00): > Clarification: two lightning talk sessions, one on Wed and one on Fri. I believe we will open registration for lightning talks on Wed before the conference starts, then the lightning talks on Friday can be signed up for during the conference

Ludwig Geistlinger (13:05:40) (in thread): > Thanks!

2024-06-11

Ziru Chen (04:36:28): > @Ziru Chen has joined the channel

2024-07-03

Anthony Christidis (12:48:35): > @Anthony Christidis has joined the channel

Anthony Christidis (13:23:11): > Hello! I recently registered for the Bioconductor conference in July this month (where I will be giving a talk), but when I registered I did not receive a receipt (by e-mail or otherwise) for the conference. The payment did go through, so I was wondering who should be contacted to have a receipt sent to me?

2024-07-04

Maria Doyle (04:49:35) (in thread): > @Erica Feickcan you help?

2024-07-05

Margherita (12:28:54): > @Margherita has joined the channel

Erica Feick (13:00:45) (in thread): > Sorry, we had the holiday here in the US so everything is delayed. I’ve put in a request with our financial partner to send you a receipt.

Anthony Christidis (13:01:24) (in thread): > Thanks,@Erica Feick.

Jacques SERIZAY (16:25:01): > Hello there! Last year I remember usinghttps://workshop.bioconductor.org/as a workshop attendee. This year I am presenting one, and was wondering if the platform would be used again. Did I miss some info regarding that? Or are we simply not relying on it this year? Thx!

Vince Carey (22:17:11): > @Alex Mahmoud^^ … the plan is to use it again but there are some renovations going on.

Alex Mahmoud (23:20:56): > The plan is still to use it, and we wrote up some instructions for it, but not sure if it was sent out or not yet. tldr is nothing much will change for workshop developers, can still use BuildABiocWorkshop (or custom container based on bioconductor’s). Will follow up on Tuesday after next committee organizing meeting to make sure everyone gets instructions

2024-07-06

Jacques SERIZAY (10:27:22): > Sounds good! I will get started with BuildABiicWorkshop repo. Thanks!

2024-07-11

Sathish Kumar (06:22:31): > @Sathish Kumar has joined the channel

Daniela Corbetta (13:05:38): > @Daniela Corbetta has joined the channel

2024-07-15

Anthony Christidis (02:45:40) (in thread): > @Erica FeickSorry to bother you with this again, but I still haven’t received the receipt for the conference.

Erica Feick (09:31:40) (in thread): > Hi, your should have received an email from Stripe with your receipt. Can you check your spam folder?

Anthony Christidis (10:40:11) (in thread): > Hi, I looked again in my inbox and spam and could not spot such an e-mail. > > Was it sent toanthony-alexander_christidis@hms.harvard.edu? > > As an alternative, my personal e-mail isanthony_ac92@hotmail.ca.

Erica Feick (11:04:38) (in thread): > I will check with our financial partner. Unfortunately I don’t have control over it but it should have been sent to the email your registered with.

Anthony Christidis (11:05:35) (in thread): > I didn’t get the original one either when I registered a couple of weeks ago, I wonder if somehow there is an error that prevents me from receiving e-mails at all from the financial partner?

Erick Navarro (16:20:37): > @Erick Navarro has joined the channel

Maria Doyle (17:59:44) (in thread): > fyi > > :zap:BioC2024 Lightning TalksThe submission window for BioC2024 Lightning Talks is now open! We’re inviting all in-person and virtual attendees to submit a 3-minute talk for consideration in one of our two lightning talk sessions during the conference. > > > > This is a fantastic opportunity to share your work, ideas, or insights with the BioC community in a concise and engaging format. Refer to the instructions on thesubmission formfor all the details you’ll need to get your talk ready.BioC2024 virtual registration is still open!If you haven’t registered yet, you canregister here.

Maria Doyle (18:00:31): > :zap:BioC2024 Lightning TalksThe submission window for BioC2024 Lightning Talks is now open! We’re inviting all in-person and virtual attendees to submit a 3-minute talk for consideration in one of our two lightning talk sessions during the conference. > > This is a fantastic opportunity to share your work, ideas, or insights with the BioC community in a concise and engaging format. Refer to the instructions on thesubmission formfor all the details you’ll need to get your talk ready.BioC2024 virtual registration is still open!If you haven’t registered yet, you canregister here.

2024-07-16

Maria Doyle (11:11:37): > :loudspeaker:Hi everyone, > To help BioC2024 attendees connect, stay informed, and participate in various discussions, we have set up a dedicated BioC2024 Slack workspace. If you’ve registered for the conference, you should receive the link to join via email. If you haven’t yet registered, you can still register for virtual attendancehere. It’s only $10 for students and postdocs! > Looking forward to connecting with you all!

2024-07-17

Maria Doyle (08:22:29) (in thread): > Hi Anthony, > I noticed that the email address in the registration system isanthony-alexander_christidis@harvard.hms.edu, which seems incorrect. This might be why you haven’t received the receipt. I’ll check with Erica if we can correct this for you once she’s back tomorrow.

Erica Feick (09:15:54) (in thread): > I had them resend and also send to your personal email. Hopefully you have received it!

Anthony Christidis (12:05:15) (in thread): > Hi Maria and Erica, I got the receipt in my personal e-mail this time! Thank you so much to both of you and sorry for this inconvenience!

2024-07-21

Janani Ravi (09:46:21): > New#r-ladiesBioconductor collaboration! Join our lunch meetup on July 25!:point_down: - Attachment: Attachment > :writing_hand: New blog post announcing Bioconductor and R-Ladies collaboration. Check it out here.

Tim Triche (18:08:08): > A walking tour of Grand Rapids:https://trichelab.github.io/grtour/

2024-07-23

Hans-Rudolf Hotz (02:43:39): > @Hans-Rudolf Hotz has joined the channel

Shaurita (17:47:08): > @Shaurita has joined the channel

2024-07-24

Albert Sylvester (09:21:47): > @Albert Sylvester has joined the channel

Albert Sylvester (09:27:37): > Hello, I registered yesterday to attend virtually. I did get an emailed receipt for the purchase but have not recived a link to conference and cant seem to register through the RingCentral sign in. Can you help?

Albert Sylvester (09:30:19) (in thread): > This has been resolved - Thank you

2024-07-25

Levi Waldron (05:55:30): > Just catching up on some of the talks from yesterday, and I have to say it works quite smoothly! Even the subtitles are surprisingly accurate, even on technical words like microRNA, isomeres, ERCCs… Questions from the in-person audience are clearly audible and and subtitled. Easy to find the talks I want to hear. Thank you!

Stevie Pederson (11:32:54): > @Stevie Pederson has joined the channel

2024-07-26

Pariksheet Nanda (17:20:57): > @Pariksheet Nanda has joined the channel

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2024-07-29

Hiba Ben Aribi (15:18:58): > @Hiba Ben Aribi has joined the channel

2024-08-01

Wes W (16:19:33): > for those who asked , here are the satire title images from my talk… glad everyone enjoyed:smiley: - File (PNG): Untitled.png - File (PNG): TimThumb.png - File (PNG): EricaThumb.png

2024-08-02

Francesc Català-Moll (05:29:23): > Hi everyone, > I attended BioC2023 in Boston last year and now I need a certificate of attendance for institutional documentation purposes. Could anyone advise me if it’s possible to obtain such a certificate, and if so, what steps I should follow to request it? > Thank you in advance for your assistance!

Tim Triche (06:59:38): > That’sa@Marcel Ramos Pérezquestion

Marcel Ramos Pérez (10:07:00) (in thread): > Hi@Francesc Català-MollYou can generate one at theworkshop.bioconductor.org. It is the second from the list on the left. Just runBiocCertificate()and fill out the form on the shiny app.

Francesc Català-Moll (12:03:04) (in thread): > Thanks Marcel!

Marcel Ramos Pérez (12:03:55) (in thread): > Alex posted a video here :https://bioc2024.slack.com/archives/C07BH09HV70/p1722455361278949

2024-08-04

sunnyday (14:59:03): > @sunnyday has joined the channel

2024-08-08

Frédéric Bertrand (16:54:53): > @Frédéric Bertrand has joined the channel

2024-08-12

Maria Doyle (13:45:18): > :writing_hand:New Bioconductor blog post on BioC2024 conference recap. Check it out here:https://blog.bioconductor.org/posts/2024-08-12-bioc2024-recap/ - Attachment (Bioconductor community blog): BioC2024 conference recap – Bioconductor community blog > Highlights from the 2024 Bioconductor North American Conference in Grand Rapids.

2024-08-19

Rema Gesaka (09:37:11): > @Rema Gesaka has joined the channel

2024-09-03

Maria Doyle (10:22:45): > :mega:**** Announcing GBCC 2025: The first joint conference between Bioconductor & Galaxy ****:rocket:Join us June 23-26 at Cold Spring Harbor for workshops, talks, and more. Stay tuned for updates, including a logo contest! > Read more in our blog post:https://blog.bioconductor.org/posts/2024-09-03-gbcc2025-announcement/ - Attachment (Bioconductor community blog): Announcing the First Galaxy and Bioconductor Community Conference (GBCC 2025) – Bioconductor community blog > Join us at CSHL, New York, June 23-26!

2024-09-16

Mike Morgan (06:22:02): > @Mike Morgan has joined the channel

2024-09-20

Camille Guillermin (09:29:27): > @Camille Guillermin has joined the channel

2024-09-24

Jasmine Baker (22:00:12): > @Jasmine Baker has joined the channel

2024-10-02

masembe brian (01:36:47): > @masembe brian has joined the channel

2024-10-25

Maria Doyle (11:00:30): > :art:Enter the GBCC2025 Logo Contest!:art:Show off your design skills for the first-ever Galaxy and Bioconductor Community Conference (GBCC2025)! The winning logo will feature on our conference materials and website.:spiral_calendar_pad:Deadline:Dec 8, 2024:trophy:Prizes:$100 Amazon gift card for the winning design. Plus, a $25 Amazon gift card drawn randomly from other entries. > Submit your design here:https://forms.gle/mZFEhevYU4cccbUv8

2024-11-06

Ellis Patrick (22:25:11): > <!here>If anyone wants to zoom in you can join by this linkhttps://uni-sydney.zoom.us/j/87583095352

2024-11-07

Ellis Patrick (17:46:14): > We will be using the same link this afternoon. It is currently active for workshops that are in the same room this morning as well.

2024-11-13

RITU VERMA (06:00:35): > @RITU VERMA has joined the channel

RITU VERMA (06:18:35): > i am intereted in this

Maria Doyle (07:58:56) (in thread): > Hi Ritu! Feel free to explore past messages here or ask any questions—there are lots of ways to get involved with Bioconductor events!

2024-11-18

RITU VERMA (03:05:46) (in thread): > can you please explain me how to get into these events i am new here

Maria Doyle (08:03:40) (in thread): > Hi Ritu, Bioconductor events include conferences, workshops, and training sessions. You can check the Bioconductor website’sevents pageand follow us onLinkedIn,Bluesky, orMastodonfor updates. This channel focuses on the Bioconductor Conference in North America, which in 2025 will be a joint conference with Galaxy (see the blog posthere), so keep an eye out here for updates. Keep an eye out for updates, and feel free to ask any questions or let us know what you’re interested in!

2024-12-09

Jenny Drnevich (15:29:25): > We are recruiting people for the GBCC2025 conference, to help review abstracts for talks/demos/posters (likely in Feb/March). If you are interested in getting involved, please fill out this form:https://forms.gle/151JboL4fWFbDW5k9 - Attachment (Google Docs): Expression of Interest for GBCC2025 Sci Comm > Are you excited about being one of the first people to read abstracts folks submit for talks at GBCC2025 and would like to participate in the scientific committee review process? > > If yes, fill out the Expression of Interest form below with your contact info and we’ll be in touch.

2024-12-10

Aleru Divine (05:54:27): > @Aleru Divine has joined the channel

2024-12-29

Yahya Jahun (04:01:51): > @Yahya Jahun has joined the channel

2025-01-02

Gloria Amor Arroyo (08:31:50): > @Gloria Amor Arroyo has joined the channel

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2025-01-30

Maria Doyle (14:29:02): > :tada:Announcing the GBCC2025 Logo Design Winner! :tada::trophy:Winner: Marie Jossé:star2:Runner up: Charlie Bayne > Thank you to all participants for your amazing creativity! Stay tuned for more updates as we gear up for GBCC2025! - File (PNG): GBCC2025-winner_Marie-Jossé.png - File (PNG): GBCC2025-runner-up_Charlie-Bayne.png

2025-02-03

Chris Thomas (17:25:42): > @Chris Thomas has joined the channel

2025-02-11

Maria Doyle (17:21:51): > :mega:GBCC2025 Abstracts & Registration Now Open!Submit your abstract or register to join the first-ever Galaxy & Bioconductor Community Conference, June 23-26, 2025, at Cold Spring Harbor Laboratory, NY.:spiral_calendar_pad:Abstract Deadline:April 1, 2025:link:Register/Submit:gbcc2025.org

2025-02-13

NİLÜFER YILDIRIM (07:58:10): > @NİLÜFER YILDIRIM has joined the channel

2025-03-07

Ludwig Geistlinger (12:16:18): > From theconference abstract submission page, it appears that submissions for short talks and/or posters can be made. Do I understand correctly that this means there will be no package demos / workshops this year?

Jenny Drnevich (12:29:23) (in thread): > We are doing things a little differently with the joint Conference with Galaxy. There are going to be 10 1.5 hr training sessions. I think we have a form to fill out to ask people’s preferences, and on there you can indicate you are interested in leading a training session. The link I have to the form isn’t public yet.@Maria Doyledid it get sent out? I’ll also ask Tyler on the GBCC2025 channel…

Maria Doyle (13:36:13): > Good timing, we’re circulating the training form today. It’s here:https://forms.gle/i34Ag8SHMtBAmpPh7

Ludwig Geistlinger (13:51:15): > Thanks both. Looks like I need permission to access …

Ludwig Geistlinger (13:51:27): - File (PNG): Screenshot 2025-03-07 at 1.48.16 PM.png

Maria Doyle (13:54:34): > Thanks for letting us know! Can you try again now?

Maria Doyle (13:55:47) (in thread): > @Jenny Drnevichthanks, I added that info into the blurb at the top of the form

Ludwig Geistlinger (14:13:01) (in thread): > Thanks it works now!

Ludwig Geistlinger (14:25:47) (in thread): > So these training sessions are not train attendees in the use of a specific package ( = package demo) but rather thought as broad topic training eg based onworkflowsorcarpentriesmaterials?

Ludwig Geistlinger (14:31:56) (in thread): > btw one small suggestion re: proteomics (eg AlphaFold). > > proteomics = quantitative measurements of protein expression eg using MassSpec > > AlphaFold = protein structure prediction > > So it might make sense here to update that to eg: > * Protein structure prediction / design (eg AlphaFold) > * MassSpec (Proteomics, metabolomics, etc)

Maria Doyle (14:42:49) (in thread): > Thanks for the feedback! I’ve changed to what you suggested

Maria Doyle (14:47:32) (in thread): > Yes, the training sessions are intended to cover broader topics (ideally of interest across both Galaxy and Bioconductor communities). However, I’m not sure if single packages are entirely ruled out.@Jenny Drnevichcan probably provide a more definitive answer

Jenny Drnevich (15:11:04) (in thread): > I don’t think we are trying to have all training sessions as cross Galaxy/Bioconductor offerings. Our initial internal list did include “cool package demo”. So I think you could suggest you’d like to present a package demo. Maybe frame the title more in terms of the science of the package, which you will happen to demonstrate using a particular package?

Ludwig Geistlinger (16:20:48) (in thread): > Sounds good, thanks Jenny!

Maria Doyle (16:44:18): > :mortar_board:GBCC2025 Training Topics:star2:The Galaxy and Bioconductor Community Conference (GBCC2025) is coming soon! We want to hear from you: > > - Topics you’re interested in learning about > - Interest in leading a session > > Fill out the formby Friday, March 21stto help shape our training schedule!:link:https://forms.gle/i34Ag8SHMtBAmpPh7Thanks!:pray: - Attachment (Google Docs): Expression of interest for GBCC2025 training topics > GBCC2025 is coming up soon and we’d like to hear from you! This year, we’re doing things a little differently with our joint conference between Galaxy and Bioconductor. There will be 10 training sessions, each lasting 1.5 hours. > > Please fill out this form to: > Indicate the topics you are interested in learning about at GBCC this year. > Express your interest in leading a training session (optional). > Note: This year, there are no abstract submissions for package demos or workshops, only talks and posters. If you want to lead a training session, please use this form. If you’re interested in giving a talk or presenting a poster, please submit through the conference abstract submission page. > Fill out this form by Friday, March 21st, so that we can create a training schedule that better serves all of us in the Galaxy and Bioconductor community. > > Thank you for your input! > The GBCC2025 Organizing Committee

2025-03-12

Sisi Wang (19:42:29): > @Sisi Wang has joined the channel

2025-03-13

Mihai Todor (06:59:43): > @Mihai Todor has joined the channel

2025-03-28

Khadija Juma (07:26:50): > @Khadija Juma has joined the channel

2025-04-01

Jenny Drnevich (11:32:28): > Update on GBCC2025, the joint conference between Galaxy & Bioconductor held at Cold Spring Harbor: > 1. Abstract submission deadline for ~10 min TALKS is extended to April 8. You must first register for the conference but you do not have to pay the deposit now - select the “check to follow” option.https://gbcc2025.netlify.app/abstracts/submission_guidelines/ > 2. People interested in leading a ~1.5 hr TRAINING DEMOinstead fill out this form:https://forms.gle/i34Ag8SHMtBAmpPh7. This deadline is also in the process of being extended to April 8. > 3. Anyone who wants to see particular trainings should also fill out the above form, as this will help us decide what topics have the highest demand for trainings. - Attachment (Google Docs): Expression of interest for GBCC2025 training topics > GBCC2025 is coming up soon and we’d like to hear from you! This year, we’re doing things a little differently with our joint conference between Galaxy and Bioconductor. There will be 10 training sessions, each lasting 1.5 hours. > > Please fill out this form to: > Indicate the topics you are interested in learning about at GBCC this year. > Express your interest in leading a training session (optional). > Note: This year, there are no abstract submissions for package demos or workshops, only talks and posters. If you want to lead a training session, please use this form. If you’re interested in giving a talk or presenting a poster, please submit through the conference abstract submission page. > Fill out this form by Friday, April 11th, so that we can create a training schedule that better serves all of us in the Galaxy and Bioconductor community. > > Thank you for your input! > The GBCC2025 Organizing Committee

2025-04-03

Tim Triche (10:14:26): > I signed up for “maybe a 10 minute talk” but I have a complication in that we have an invited speaker coming on Tuesday and I’m hosting

Tim Triche (10:14:47): > so if there was a “yes but” option I’d have clicked that

Jenny Drnevich (11:44:39) (in thread): > We are planning on checking about day restrictions once talks are accepted.

Hervé Pagès (13:11:56) (in thread): > “Biocluster”?

Jenny Drnevich (15:16:38) (in thread): > Oops - our local cluster is called Biocluster which is so similar to Bioconductor that I’m always saying the wrong one. I even have typing muscle memory for both! Fixed now…

2025-04-14

Wes W (09:43:57) (in thread): > I can always be his understudy.

2025-04-24

Alex Mahmoud (12:26:43): > If you have any ideas for the collaboration fest / hackathon post-conference (GBCC25 joint Galaxy-Bioconductor conference in the US), please submit any and all ideas tohttps://forms.gle/RzrT75DpRh9Vb8Z16 - Attachment (Google Docs): GBCC Cofest Ideas Submission > Submit any and all ideas you want to lead and/or in which you’d like to participate.

2025-04-25

Marisa Loach (04:59:21): > @Marisa Loach has joined the channel