#gwas-data
2021-01-23
Vince Carey (10:42:38): > @Vince Carey has joined the channel
Vince Carey (10:42:38): > set the channel description: Continues a discussion of data structures for GWAS-related data, especially summary statistics
Malte Thodberg (10:43:01): > @Malte Thodberg has joined the channel
Kasper D. Hansen (10:43:01): > @Kasper D. Hansen has joined the channel
Kevin Blighe (10:43:01): > @Kevin Blighe has joined the channel
RGentleman (10:43:12): > @RGentleman has joined the channel
Qian Liu (10:43:24): > @Qian Liu has joined the channel
Vince Carey (10:45:46): > https://vjcitn.github.io/gwaslake/articles/gwaslake.htmldefines a container and starts a documentation effort to aid interested parties … building the container with gwasglue proved problematic, and a few packages needed DESCRIPTION tweaked, and thus repos were forked. - Attachment (vjcitn.github.io): gwaslake: exploring the MRC GWAS API and data/software ecosystem with Bioconductor > gwaslake
Yagoub Ali Ibrahim Adam (14:54:29): > @Yagoub Ali Ibrahim Adam has joined the channel
Lambda Moses (14:54:43): > @Lambda Moses has joined the channel
Sridhar N (14:55:40): > @Sridhar N has joined the channel
FelixErnst (19:32:54): > @FelixErnst has joined the channel
rohitsatyam102 (21:38:02): > @rohitsatyam102 has joined the channel
2021-01-24
Malte Thodberg (03:54:58): > Looks cool! > Pretty interesting to see that their gwasglue and ieugwas packages don’t use any Bioconductor at all…
Ludwig Geistlinger (12:02:21): > @Ludwig Geistlinger has joined the channel
Frederick Tan (14:57:09): > @Frederick Tan has joined the channel
Hector Climente (17:19:21): > @Hector Climente has joined the channel
2021-01-25
Sean Davis (12:37:09): > @Sean Davis has joined the channel
2021-02-08
Rene Welch (11:26:40): > @Rene Welch has joined the channel
2021-02-23
Wynn Cheung (10:32:40): > @Wynn Cheung has joined the channel
2021-03-12
Julia Romanowska (14:51:24): > @Julia Romanowska has joined the channel
2021-04-21
Aishwarya Mandava (13:55:58): > @Aishwarya Mandava has joined the channel
2021-04-29
Tembi F (04:47:32): > @Tembi F has joined the channel
2021-05-01
Arjun Krishnan (21:42:34): > @Arjun Krishnan has joined the channel
2021-05-11
Megha Lal (16:45:00): > @Megha Lal has joined the channel
2022-01-03
Kurt Showmaker (17:04:10): > @Kurt Showmaker has joined the channel
2022-01-28
Megha Lal (11:12:49): > @Megha Lal has left the channel
2022-02-01
Lindsay Clark (09:59:01): > @Lindsay Clark has joined the channel
2022-05-05
Aedin Culhane (12:22:45): > @Aedin Culhane has joined the channel
2022-05-10
Daniel Adediran (05:11:22): > @Daniel Adediran has joined the channel
2022-10-10
Mercilena Benjamin (13:55:59): > @Mercilena Benjamin has joined the channel
2022-10-28
Brian Schilder (08:31:02): > @Brian Schilder has joined the channel
2022-11-06
Sherine Khalafalla Saber (11:20:46): > @Sherine Khalafalla Saber has joined the channel
2022-12-11
Vince Carey (07:31:01): > Anyone experienced with variant annotation by Nirvana?https://illumina.github.io/NirvanaDocumentation/ - Attachment (illumina.github.io): Introduction | Nirvana > Clinical-grade variant annotation
2022-12-12
Kendall H. Burks (17:58:27): > @Kendall H. Burks has joined the channel
2023-01-03
Alan Murphy (10:33:52): > @Alan Murphy has joined the channel
2023-01-21
Hien (16:02:33): > @Hien has joined the channel
2023-01-26
Hien (23:20:46): > @Hien has left the channel
2023-03-10
Joaquin Reyna (15:35:35): > @Joaquin Reyna has joined the channel
2023-05-03
Rebecca Butler (16:16:11): > @Rebecca Butler has joined the channel
2023-06-19
Pierre-Paul Axisa (05:10:47): > @Pierre-Paul Axisa has joined the channel
2023-08-12
Xiuwen Zheng (22:19:22): > @Xiuwen Zheng has joined the channel
2024-01-26
Vince Carey (05:44:50): > VariantAnnotation (devel branch) now includes vep_by_region, which prepares a request to the ensembl REST API for variant effect prediction. The perl-based API interfaces in ensemblVEP will no longer be maintained; the Bioconductor ensemblVEP package will be deprecated in 3.19.
2024-07-29
JP Flores (17:09:32): > @JP Flores has joined the channel
2024-08-27
Bharat Mishra (11:36:52): > @Bharat Mishra has joined the channel
2024-09-16
Mike Morgan (06:24:29): > @Mike Morgan has joined the channel
2024-09-18
Alan Murphy (05:05:51): > Hey All! I’m the creator of theMungeSumstatsBioconductor package which standardises and performs quality control of GWAS sumstats. We recently encountered an issue with mislabeled allele columns in a GWAS which I would like to get the communities opinions on? If you have 5 minutes, see thisTwitter poston it and therelated github issue
2025-03-18
Nicolo (15:00:54): > @Nicolo has joined the channel