#biocchallenges

2020-12-18

Kevin Rue-Albrecht (13:28:05): > @Kevin Rue-Albrecht has joined the channel

Kevin Rue-Albrecht (13:28:05): > set the channel description: General coordination of BiocChallenges

FelixErnst (13:29:32): > @FelixErnst has joined the channel

Charlotte Soneson (13:29:40): > @Charlotte Soneson has joined the channel

FelixErnst (13:29:51): > thanks for setting uo the template

FelixErnst (13:30:05): > cloned and deployed:slightly_smiling_face:

Kevin Rue-Albrecht (13:30:24): > My pleasure! > > cloned and deployed > hahaha:laughing:

FelixErnst (14:31:37): > The topics are hardcoded right now. Do you have an idea how they could be extended? Maybe import all biocViews terms as acceptable?

Kevin Rue-Albrecht (14:35:56): > they’re hard-coded insofar as it’s a character vector in the BiocChallenges package, so adding topics is just a PR away:slightly_smiling_face:

FelixErnst (14:38:42): > challenge accepted!

FelixErnst (14:38:49): > :slightly_smiling_face:

Dario Righelli (14:43:21): > @Dario Righelli has joined the channel

Dario Righelli (14:51:04): > Hi guys, I was wondering about the Bioc Classes, that are increasing in number and sometimes they bring with them a few dependencies that can require time demanding installations. > A good example is theupsetSamplesfunction into theMultiAssayExperimentpackage which requires theupsetRpackage (and with it other graphical dependencies). > A few years ago I wrote an upset plot function for theGenomicRangesListclass (never released), so I thought that we can try to collect them into a unified external package, let’s sayBiocPlotsor something similar. > Just to be able to lighten up the classes and at the same time collecting the same dependencies in a unified package. > Do you think this could be a candidate for the BiocChallenges?

Dario Righelli (14:54:33): > I know that in the end a similar package would depend on a few Bioc Classes, but most of them inherits from the same ancestor…

2020-12-21

FelixErnst (06:46:14) (in thread): > I added the PR. I am not sure, why the GHA doesn’t complete though.

Kevin Rue-Albrecht (14:27:36) (in thread): > did you enable github action on your fork?

Kevin Rue-Albrecht (14:28:07) (in thread): > I tweaked the PR anyway, so gha is running on a branch of the main repo

2021-01-22

Annajiat Alim Rasel (15:41:58): > @Annajiat Alim Rasel has joined the channel

2021-03-03

Aedin Culhane (00:27:07): > @Aedin Culhane has joined the channel

2021-03-30

Sudarshan (04:26:16): > @Sudarshan has joined the channel

2021-05-01

Arjun Krishnan (21:39:34): > @Arjun Krishnan has joined the channel

2021-05-11

Megha Lal (16:44:06): > @Megha Lal has joined the channel

2021-07-19

Leo Lahti (17:00:20): > @Leo Lahti has joined the channel

2021-11-26

Francesc Català (06:44:41): > @Francesc Català has joined the channel

2022-01-28

Megha Lal (11:12:15): > @Megha Lal has left the channel

2023-09-20

Jaykishan (05:29:46): > @Jaykishan has joined the channel

2024-05-14

Lori Shepherd (10:18:05): > archived the channel