#clinical

2020-09-01

Sean Davis (13:04:39): > @Sean Davis has joined the channel

Sean Davis (13:04:39): > set the channel description: Discuss clinical applications and standards

Vince Carey (13:05:52): > @Vince Carey has joined the channel

Levi Waldron (13:05:52): > @Levi Waldron has joined the channel

Leonardo Collado Torres (13:05:52): > @Leonardo Collado Torres has joined the channel

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Aedin Culhane (13:05:52): > @Aedin Culhane has joined the channel

Sean Davis (13:05:58): > https://github.com/FirelyTeam/RonFHIR

Sean Davis (13:06:29): > Just wanted to seed a place to discuss clinical and clinical-touching applications.

2020-10-21

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2020-10-23

Rebecca Howard (08:17:38): > @Rebecca Howard has joined the channel

ImranF (11:42:35): > @ImranF has joined the channel

2020-11-16

Robert Castelo (05:17:42): > @Robert Castelo has joined the channel

2020-11-19

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2021-01-22

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2021-02-23

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2021-02-24

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2021-03-20

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2021-05-23

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2021-05-28

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2021-08-05

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2021-08-15

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2021-11-08

Paula Nieto García (03:26:17): > @Paula Nieto García has joined the channel

2021-12-07

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2022-04-12

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2022-05-10

Sean Davis (14:48:40): > https://events.cancer.gov/hdrp/machinelearning - Attachment (events.cancer.gov): Machine Learning and Health Outcomes in Cancer Care Delivery Research (Overview) | Events Registration > Overview The National Cancer Institute is conducting a Machine Learning and Health Outcomes in Cancer Care Delivery Research virtual workshop from May 16-17, 2022 focused on research in machine learning, cancer care delivery, and health outcomes. The goals are to identify scientific gaps, barriers, and opportunities in this emerging area of cancer-focused healthcare research.

Umar Ahmad (17:58:55): > @Umar Ahmad has joined the channel

2022-07-22

Gary Sieling (14:48:15): > @Gary Sieling has joined the channel

2022-07-28

Krithika Bhuvanesh (13:52:05): > @Krithika Bhuvanesh has joined the channel

2022-08-26

Connor Higgins (21:04:30): > @Connor Higgins has joined the channel

2022-10-04

Aedin Culhane (20:12:03): > @Sean Davishttps://esciencelab.org.uk/projects/eosc4cancer/ - Attachment (esciencelab.org.uk): EOSC4Cancer > Funded by call HORIZON-INFRA-2021-EOSC-01-06 101058427, EOSC4Cancer will provide a federated infrastructure for the exploitation of cancer data for the EU Ca…

Aedin Culhane (20:17:05): - File (PNG): image.png

Aedin Culhane (20:17:48): - File (PNG): image.png

Aedin Culhane (20:20:09): - File (PNG): Screenshot 2022-10-05 at 01.19.18.png

Aedin Culhane (20:20:22): > https://pharmaverse.org - Attachment (pharmaverse.org): pharmaverse > This is meta description

Aedin Culhane (20:22:45): > http://openpharma.github.io

2022-10-06

Alan Aw (19:27:39): > @Alan Aw has joined the channel

kipper fletez-brant (19:27:54): > @kipper fletez-brant has joined the channel

Amarinder Singh Thind (19:40:35): > @Amarinder Singh Thind has joined the channel

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Spencer Nystrom (20:47:45): > @Spencer Nystrom has joined the channel

Ana Beatriz Villaseñor Altamirano (21:02:34): > @Ana Beatriz Villaseñor Altamirano has joined the channel

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2022-10-07

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Vince Carey (17:36:20): > Here’s a very rudimentary exploration of FHIR:https://vjcitn.github.io/BiocFHIR - Attachment (vjcitn.github.io): Illustration of FHIR ingestion and transformation using R > FHIR R4 bundles in JSON format are derived from https://synthea.mitre.org/downloads. Transformation inspired by a kaggle notebook published by Dr Alexander Scarlat, https://www.kaggle.com/code/drscarlat/fhir-starter-parse-healthcare-bundles-into-tables.

Vince Carey (17:38:05): > Any FHIR experts should not hold back – this is technically extremely limited. But I would like it to be a basis for introducing better interrogation and integration technologies in the context of the synthea data and any other public collections.

2022-10-08

Taku Iwaki (17:47:26): > @Taku Iwaki has joined the channel

2022-10-09

Adam Stevens (17:19:13): > @Adam Stevens has joined the channel

2022-10-10

Mercilena Benjamin (13:55:35): > @Mercilena Benjamin has joined the channel

2022-10-17

Spencer Nystrom (10:20:39): > Not necessarily a Bioc question, but maybe someone here knows. Are DAIDS criteria defined/vendored in a json or other schema somewhere? All I can dig up are the NIAID PDFs with the criteria in plain text….

Vince Carey (11:55:19): > criteria for AIDS or AIDS-related syndromes? i used to work on HIV clinical trials and know some people at NIAID but what exactly do you need? what are the pdf links?

Spencer Nystrom (16:53:01): > Ah, sorry. DAIDS grading is criteria for evaluating severity grades of adverse events.https://rsc.niaid.nih.gov/clinical-research-sites/daids-adverse-event-grading-tablesFor example in this pdf it describes lab value ranges that correspond to different clinical severity levels.https://rsc.niaid.nih.gov/sites/default/files/daidsgradingcorrectedv21.pdfI was hoping to find a csv file or something that had these criteria to do automated data classifications.

2022-10-18

Vince Carey (22:21:38): > @Spencer Nystromthe answer appears to be negative. I tried to register at the regulatory support center > but their registration page is messed up for non-NIH users. If you would like to pursue this further let’s discuss in DM.

2022-10-19

Spencer Nystrom (06:46:09): > Thanks for giving it a shot, Vince! Really appreciate it.

2022-10-24

Filip Stachura (10:44:10): > @Filip Stachura has joined the channel

2022-11-17

Konstantinos Geles (Constantinos Yeles) (17:26:57): > @Konstantinos Geles (Constantinos Yeles) has joined the channel

2023-01-18

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2023-01-31

Rebecca Butler (15:07:38): > @Rebecca Butler has joined the channel

2023-02-28

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2023-03-15

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2023-04-28

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2023-05-18

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2023-06-19

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2023-08-04

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2023-08-08

Aedin Culhane (14:31:11): > Whats the best way to work with clinVar and hgvsg in R/Bioconductor?

2024-03-26

Sara m.morsy (16:07:52): > @Sara m.morsy has joined the channel

2024-08-21

Laura Symul (08:56:41): > @Laura Symul has joined the channel

2024-09-05

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2024-09-24

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2024-10-23

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2024-12-05

Zahraa W Alsafwani (16:50:56): > @Zahraa W Alsafwani has joined the channel

2025-01-09

Ammar Sabir Cheema (11:35:42): > @Ammar Sabir Cheema has joined the channel

2025-03-18

Nicolo (14:58:39): > @Nicolo has joined the channel

2025-04-15

Aedin Culhane (14:21:54): > The Italian Biostatistics Group (IBIG) organised a series of 4 webinars focusing on R packages useful for the design and analysis of clinical trials, presented by prominent pharma industry experts: > > - 21 May: Frank Bretz (Novartis) and Dong Xi (Gilead), gMCP: Graph Based Multiple Comparison Procedures. > > - 19 June: Marcel Wolbers and Isaac Gravestock (Roche), rbmi: Reference Based Multiple Imputation. > > - 24 September: Bodo Kirsch (PSI Visualisation Special Interest Group lead), subscreen: Systematic Screening of Study Data for Subgroup Effects. > > - 13 November: Gernot Wassmer and Friedrich Pahlke (RPACT GbR), rpact: Confirmatory Adaptive Clinical Trial Design and Analysis. > > For subscription and further details:https://simef.it/index.php?option=com_eventbooking&view=event&id=716&catid=7&Itemid=386&lang=it - Attachment (Società Italiana di Medicina Farmaceutica): Webinar series on using R software packages > Webinar series on using R software packages

Aedin Culhane (14:22:05): > Sorry just realized they are charging for these